UFO11441.5prime Sequence
1112 bp (1006 high quality bases) assembled on 2012-05-17
> UFO11441.5prime
CAGTCGACATGAGCCACTTCGACTATCTGTTTAAGGTTCTCGTCCTGGGT
GACAGCGGCGTGGGCAAATCCTGCCTGCTAATGCGTTTCTCGGATGACCG
ATTCACCGAGAAATACCTGAGAACGATGGGCATAGATGTCAAGGCGCGCA
GCGTGGAGCTGGTCAGTCGGGTGATGATGCTGCAGGTCTGGGATACCTCC
GGCGACAAGCGCTTCAATTCGCTGATGCCGTCCAATTATCGCAGTGCCCA
TGGCATACTGCTCGTCTACGACATAACGTCGTCCAAAAGTTTCCAAAACA
TCGATGGCTGGATGAAGGAGATACGGCGCATGTGTCCGGATAAGGTAACC
GTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAACCATCGCCAGGTGAG
CATGGAGCAGGGGTTCAACTATGCCCATCGTGGGGCACTCGGCTTTGAAG
AGGTTTCCGCCAAGAGTGGAATGAATGTATATGACATATTTAGCTCGTTG
GCAATGGACATATACCATCGTTATGTACTTCACAACCCGATCAGCCCGAT
GCCATCTGAGCAGGAAGAGGAGGACGCTGCAGAGTCACCGGATGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCAGCGGCATCAGCACTTGTCGCT
GCGTATATATTTGCCATGTGAAACGGGGCGAGAGTGTCATATGCCACGTT
AAATCAACTGTGAACCTCACCAGGGATGCTGAAACGAAAACATATTCTCA
TACCCTAAGAAAGAGCAGTTCACCGGTACACGCACTTGCATAATGGTTAG
ACTGCGATCGTC
UFO11441.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RabX2-RA | 791 | CG2885-RA | 68..652 | 9..593 | 2925 | 100 | Plus |
| Rab9Db-RA | 871 | CG9807-RA | 68..658 | 9..593 | 1750 | 86.9 | Plus |
| Rab9E-RA | 889 | CG32673-RA | 86..676 | 9..593 | 1720 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10417496..10418080 | 9..593 | 2925 | 100 | Plus |
| X | 23542271 | X | 10622568..10623158 | 593..9 | 1665 | 86.5 | Minus |
| X | 23542271 | X | 10661168..10661758 | 593..9 | 1635 | 86.2 | Minus |
| X | 23542271 | X | 10589182..10589772 | 9..593 | 1620 | 86 | Plus |
| X | 23542271 | X | 10950373..10950963 | 593..9 | 1620 | 86 | Minus |
| X | 23542271 | X | 10951907..10952419 | 521..9 | 1500 | 86.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:49:56 has no hits.
UFO11441.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed on 2012-05-17 09:45:38 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:07 Download gff for
UFO11441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX2-RA | 58..655 | 1..597 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:05 Download gff for
UFO11441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX2-RA | 58..655 | 1..597 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:05 Download gff for
UFO11441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10417486..10418083 | 1..597 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:07 Download gff for
UFO11441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10311519..10312116 | 1..597 | 98 | == | Plus |
