UFO11442.5prime Sequence
1125 bp (1001 high quality bases) assembled on 2012-05-17
> UFO11442.5prime
CAGTCGACATGGGACGCATTTTCTTGGAACATCTTGGGGGTCTGAAACTC
TTCAATTGCGCCCAATGCCACACGAACCTGACCAACCGCAGTCAATTGAT
CAGTACCCGATTCACAGGCGCAACAGGACGCGCCTATCTGTTTAAGCGTG
TGGTCAACCTGACCTTCAGCAACATCCAGGAACGGGTCATGCTCACGGGT
CGCCACATGGTGCGCGACGTTATGTGCAAGAATTGTGGAGCCAAACTTGG
CTGGATGTACGAGTTCGCCACCGAAGAGTCACAAAAATACAAGGAGGGTC
GCGTTATCCTGGAGTACGCCCTGATCACAGAGGCAGAGGGCTTTCCGTCG
GAGGCCGCCACCACGAGTCATGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGCCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAAT
AAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTACACGCCACATCTTG
CGATATATGTGTAGAACTGCCGGAATCGTCGTGGTATTCACTCCAGAGCG
ATGATACGTTTCAGTTGCTCATGGAAACGGTGTACATGGTGACACTATCC
CATATCACAGCTCACGTCTTCATGCATACGAAATCCGATGACATCATCAG
GCGGCAGATGTGATAAGGCGATAAACCTGGGCTTATTTTTCTTCACGGCT
AAGCGCGTATTATTCCGATGCTGAA
UFO11442.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yippee-RA | 1136 | CG1989-RA | 341..703 | 9..371 | 1815 | 100 | Plus |
| Yippee-RB | 1293 | CG1989-RB | 341..618 | 9..286 | 1390 | 100 | Plus |
| Yippee-RB | 1293 | CG1989-RB | 776..860 | 287..371 | 425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13386589..13386752 | 286..123 | 820 | 100 | Minus |
| X | 23542271 | X | 13386814..13386932 | 127..9 | 595 | 100 | Minus |
| X | 23542271 | X | 13386347..13386431 | 371..287 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:50:00 has no hits.
UFO11442.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:38 Download gff for
UFO11442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yippee-RA | 311..685 | 1..377 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:08 Download gff for
UFO11442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yippee-RA | 311..685 | 1..377 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:08 Download gff for
UFO11442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yippee-RA | 334..708 | 1..377 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:08 Download gff for
UFO11442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13386347..13386431 | 287..371 | 100 | <- | Minus |
| X | 13386589..13386748 | 127..286 | 100 | <- | Minus |
| X | 13386815..13386936 | 1..126 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:08 Download gff for
UFO11442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13280380..13280464 | 287..371 | 100 | <- | Minus |
| arm_X | 13280622..13280781 | 127..286 | 100 | <- | Minus |
| arm_X | 13280848..13280969 | 1..126 | 96 | | Minus |
