UFO11443.5prime Sequence
1066 bp (932 high quality bases) assembled on 2012-05-17
> UFO11443.5prime
CAGTCGACATGTTCAATATTATCCTTCTGGCAACAATCCTAGTGAGCGTG
GCTCAGGCCACAATCATCATTAAGCCCGAAAATCCCGTGGAGGAGACCAC
CAAGTGCCAGATCTACTGGCGCGAACACGCCTGGGCTCTTGAAGATTGTG
TGTGCCGGGTCTTCCAGAACGGCTGTCTTCTGAACGAGGAGAGCAATCGG
CGGGAAAAGGCTGGAAAAACCCCTCTAATTCCGGTCACCGAGCAGGTGTG
CCAGAAGTTCATCAAGCGCAAGTGCTTCCTTGGATGGCCTGTGCTGGCCA
AGTTCCCGATTCCATCGCCATGCGGATGCAATGGCAAACAGGGCAGTCTG
GAAATCAAGAAGTTTTTGAGTCTGTGCGAACTGCAGAAGTACGCAGCTGA
ATGCAACAAACCCTATATCAGCTACTCGAAGTGTGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAAACGGGGCGAAGAGTTGTCCATATTGGCCACGT
TTAAATCAAAACTGGTGAACTCACCCAGGGATTGGCTGAGACGAAAACAT
ATCTCATAACCCTTTAGGGAAATAGCCAGTTTCACGTACACGCCACATCT
GCGAATAAATTGTGTAGACTGCGAATCGTCTGTATCACTCCAGAGCGAAT
GAAACGTTCAGTGCTCATGAAACGGTGTAACAGTTGACCTATCATATCAC
AGCTCACGGCTCATGC
UFO11443.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7587-RA | 550 | CG7587-RA | 38..463 | 9..434 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17594423..17594636 | 9..222 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 17594702..17594890 | 223..411 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:50:03 has no hits.
UFO11443.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:39 Download gff for
UFO11443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7587-RA | 38..466 | 9..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:09 Download gff for
UFO11443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7587-RA | 38..466 | 9..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:11 Download gff for
UFO11443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7587-RA | 38..466 | 9..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:11 Download gff for
UFO11443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17594423..17594636 | 9..222 | 100 | -> | Plus |
| 3R | 17594702..17594890 | 223..411 | 100 | -> | Plus |
| 3R | 17594948..17594970 | 412..434 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:09 Download gff for
UFO11443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13420145..13420358 | 9..222 | 100 | -> | Plus |
| arm_3R | 13420424..13420612 | 223..411 | 100 | -> | Plus |
| arm_3R | 13420670..13420692 | 412..434 | 100 | == | Plus |
