UFO11446.5prime Sequence
1113 bp (980 high quality bases) assembled on 2012-05-17
> UFO11446.5prime
CAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCCTCTTTGTG
GGCCTCTTCTCCGCGAATTTGTGCGAAGAAGCAGTGACCACACCGGCTCC
AGCGGACACCACCACCCAGGAATCCAAGAACACCACCACTCCGCCGGACA
CCACCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCACCACAACT
GAAAAGACCACGACGACGCCACCAATTACCACATCGACTGAGAAGACCAC
AACTTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCCGGCCAGCA
CCACCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTGGAACTACA
TCTACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCGCCGCCACA
CACATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCATTTCGATG
GATCCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGCTCGCTATC
GGCTTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGCAACTACCA
CACCCTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTTGTCGCCTTGCGTATATTTTTTGCCCATGGTGAAAACGGGGG
CGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAACTTC
ACCCAGGGATTGGCTGAAACGAAAACATATTTCTCAATAATCCCTTAGGA
TAGGCAGTTTCACCGTAACCCGCCCACATCCTGCCAATATATGTTGTAGA
AACTGGCGGATTC
UFO11446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vsg-RC | 2167 | CG16707-RC | 122..670 | 9..557 | 2745 | 100 | Plus |
| vsg-RD | 2273 | CG16707-RD | 228..776 | 9..557 | 2745 | 100 | Plus |
| vsg-RE | 2164 | CG16707-RE | 122..667 | 9..557 | 2690 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9715742..9716219 | 80..557 | 2390 | 100 | Plus |
| 3L | 28110227 | 3L | 9714551..9714623 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:49:36 has no hits.
UFO11446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:34 Download gff for
UFO11446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RD | 224..785 | 1..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:54 Download gff for
UFO11446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RD | 220..781 | 1..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:56 Download gff for
UFO11446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RD | 220..781 | 1..563 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:56 Download gff for
UFO11446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9714543..9714623 | 1..81 | 95 | -> | Plus |
| 3L | 9715744..9716224 | 82..563 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:54 Download gff for
UFO11446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9707643..9707723 | 1..81 | 95 | -> | Plus |
| arm_3L | 9708844..9709324 | 82..563 | 99 | == | Plus |
