UFO11447.5prime Sequence
1167 bp (1055 high quality bases) assembled on 2012-05-17
> UFO11447.5prime
CAGTCGACATGATGAACGCCGTGTCGCGTGCTTACGTCAGAGGCGGAGCC
CAGGTCCTCTCCACGGGATTGAAGGCGAGCGGCGTGGCCGTCAACTCGAT
GGCCAATCGCCAGGCACACACCGACCTGCAGGTGCCAGACTTCTCGGCAT
ACCGCCGGGAGTCCGTGAAGGACAGTCGTCGTCGCAACGACACCGCCGAG
GAGCGCAAGGCCTTCTCCTACTTGATGGTCGGCGCCGGAGCCGTGGGCGG
TGCCTATGCGGCCAAGGGCCTGGTTAACACCTTCATCGGATCGATGAGCG
CCTCCGCCGAAGTGCTGGCCATGGCCAAGATCGAGATCAAGCTGTCCGAC
ATCCCGGAGGGCAAGTCGGTTACTTTCAAGTGGCGCGGAAAGCCCCTGTT
CATCCGCCACCGCACGGCCGCGGAAATCGAGACCGAGCGAAATGTGCCCA
CATCCACGCTGCGCGATCCGGAGGCTGATGATCAACGTGTGATCAAGCCC
GAGTGGCTGGTGGTCATCGGAGTGTGCACGCATCTGGGCTGTGTGCCCAT
CGCGAACGCCGGCGACTGGGGTGGCTACTACTGCCCCTGCCACGGCTCCC
ACTACGACGCCTCCGGAAGGATCCGCAAGGGACCCGCGCCCCTCAACTTG
GAGGTGCCCACCCACGAGTTCCCCAACGAGGGTCTTCTCGTGGTCGGCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCTGCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGGCGCATCAGCACCTTGT
CGCTTGGCGTTTAATTATTGCCCATGGGTGAAAACGGGGCGAAGAAAGTG
TTCCATATTGGCCAGTATCCAACCTGGGTGGAACTCCACATGAATTGCCT
GAACGAAAAAACTTTTT
UFO11447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RFeSP-RE | 1000 | CG7361-RE | 85..774 | 9..698 | 3450 | 100 | Plus |
RFeSP-RD | 1118 | CG7361-RD | 85..774 | 9..698 | 3450 | 100 | Plus |
RFeSP-RB | 851 | CG7361-RB | 85..774 | 9..698 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1613044..1613424 | 482..102 | 1905 | 100 | Minus |
2L | 23513712 | 2L | 1612773..1612988 | 698..483 | 1080 | 100 | Minus |
2L | 23513712 | 2L | 1613983..1614076 | 102..9 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:49:40 has no hits.
UFO11447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:35 Download gff for
UFO11447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RFeSP-RB | 99..796 | 1..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:57 Download gff for
UFO11447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RFeSP-RB | 77..774 | 1..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:58 Download gff for
UFO11447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RFeSP-RB | 77..774 | 1..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:58 Download gff for
UFO11447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1612773..1612988 | 483..698 | 100 | <- | Minus |
2L | 1613044..1613423 | 103..482 | 100 | <- | Minus |
2L | 1613983..1614084 | 1..102 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:57 Download gff for
UFO11447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1612773..1612988 | 483..698 | 100 | <- | Minus |
arm_2L | 1613044..1613423 | 103..482 | 100 | <- | Minus |
arm_2L | 1613983..1614084 | 1..102 | 96 | | Minus |