UFO11451.5prime Sequence
1141 bp (1026 high quality bases) assembled on 2012-05-17
> UFO11451.5prime
CAGTCGACATGTACAAGTTAGTCTTCCTCGTCTGCTCCGCCCTGCTGCTC
AGCTATGTCCTGGCCAGGCCACAGGATCAGCGGGCGGGAGCCACCAGTGC
AGCGACCACCACCACAGCTGCCACCATTGTCAAGCAGGATAATGTGAACA
ACGCCGACGGTAGCTTCAACAGCAGCTATGAGACATCGAACGGAATACGC
GTAGAGAACATTGGCTATCTGAAGAAGATCATCGTTCCCAAGACCGAGAC
CTCCGATGGCCAGGTGATCGACGAACACGAGGAGCTTGTACTGGTCCAGA
CCGGATCCTACAGCTACAGCGATCCCGATGGCAATCTCATCACCCTGCGC
TACGTGGCCGATGAGAACGGATTCCAGCCGGAGGGTGACCATCTGCCGGT
GGCACCTCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTA
GGAAATAGGCCAGGTTTTCACCGTACACGCCACATCTTGCGAATATATGT
GTAGAAACTGCCGAAATCGTCGTGTATTCACTCCAGAGCGATGAAAACGT
TTCAGTTGCTCATGAAACGGTGTAACAAGGTGAACACTATCCCATATCAC
AGCTCACGTCTTTCATTGCATACGAATCCGATGACATCATCAGGCGCAGA
GGATAGGCGATAAACTTGGGCTACTTCTTTACGGCCTTAAA
UFO11451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ag-RA | 650 | CG8511-RA | 67..473 | 4..410 | 2020 | 99.8 | Plus |
| Cpr65Ax1-RA | 389 | CG34270-RA | 291..338 | 350..397 | 180 | 91.7 | Plus |
| Cpr65Ax2-RB | 732 | CG18777-RB | 290..337 | 350..397 | 180 | 91.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12408110..12408346 | 174..410 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 12407859..12408030 | 4..175 | 845 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:50:23 has no hits.
UFO11451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:43 Download gff for
UFO11451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ag-RA | 21..436 | 1..419 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:23 Download gff for
UFO11451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ag-RA | 64..479 | 1..419 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:21 Download gff for
UFO11451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ag-RA | 64..479 | 1..419 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:21 Download gff for
UFO11451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12407856..12408030 | 1..175 | 98 | -> | Plus |
| 2R | 12408112..12408346 | 176..410 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:23 Download gff for
UFO11451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8295361..8295535 | 1..175 | 98 | -> | Plus |
| arm_2R | 8295617..8295851 | 176..410 | 100 | == | Plus |
