UFO11455.5prime Sequence
1112 bp (995 high quality bases) assembled on 2012-05-17
> UFO11455.5prime
CAGTCGACATGCTCCGCCAGAACAAGAATACCAGTACCAGTCTGCTGAAC
CTAAGCATAGGCGATGTGGGAGGCAGCCATCCACAGGGGCAGTCGCAATT
TTGGGAACTGGATACGCTGCCTAAGCAGTTCGTCCTGTCCATGAAAAAGC
TCTTCGACATCTTAGATGACAAGCAGACCGGATACGTGCGCTTCACGGAC
ATCGAGAAGGGCTGGCAGGATGATGGCTCCAAGGGACTGCCACGCGGAGT
TGTGGACTCACTCCGTCGGGTCACTCCCAGTAGCGGACTTCTCTCCTTCG
AGCGGTTCTGCGCCGGCCTCAAGCTGTGCCTGCTCCGCAATCAGCAAAAC
GCTGTGGAAGACCTGAAGTTGCGGCCTCGTTCCCACGGAACTCTTGCTCC
GGAGATGGAGTTCCATTCTCCTGCTCCGCCGCCAAAACCTCCACGACAGG
TACCCAAGTCCCCTGCTCTGGGTAAAGACGACATTCGCCATGCCCTCCAA
AACTGGCAGCTGAACCTGATGGCGGACGCAGGAAAGTCAAAAACGACGCA
GTCGCGGGAACAATTCGAACACCGTGGATCGGCTGACGGTGGCTCTTCCT
CCACCTCTGCTTCGGCCACCGACTGGAGCCTGGCCCTTCCGGCTGTGCCC
AAGAAGACCAGCAGCAAGCGCAGAGAGTCGCGGAGGCACACTCTGCAACA
CGGCATCGATTACAACATGCTAAAAAGACTGAAGCAATTGGAGGAGCAGC
GGGAACTGCTTCTTTTCGGACTCGATGGCGTGAGAACGCACGCGATTGGT
ATATGATGCAGTGCTCAATGTACAGGAGCAGATAAAGTATTTCGGCCGTT
TAGGAACCCGATTTGATCAGGGTCTGAACTGCAGCAAGAAAGGCTAAACT
TTCAACGCGCCCGCGTTTTGAGGCCAATCGCAGCCTCCAGATTCTGGCCG
ACACCTGGGGAGCACGGCGCTACCCACTGCACATTATTTGCTGTGCGACA
CCCACCGTCCAAACGAGCAGATGTCGATCTGCTCAGTCGGGTTCGCGAGA
GCCGCCGCTCTGTTCAGAACTTGTACGAAGGGCAGCACTTCTCATTCCAT
CCGCAGCTTCTG
UFO11455.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3880-RA | 1451 | CG3880-RA | 190..1299 | 9..1106 | 5020 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24761288..24762146 | 9..865 | 4165 | 99.5 | Plus |
| 2R | 25286936 | 2R | 24762209..24762436 | 871..1089 | 485 | 90.9 | Plus |
Blast to na_te.dros performed 2014-11-28 02:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 17..103 | 417..504 | 113 | 60.2 | Plus |
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 6956..7042 | 417..504 | 113 | 60.2 | Plus |
UFO11455.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:45 Download gff for
UFO11455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3880-RA | 91..1206 | 9..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:30 Download gff for
UFO11455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3880-RA | 190..1305 | 9..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:25 Download gff for
UFO11455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3880-RA | 190..1305 | 9..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:25 Download gff for
UFO11455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24761279..24762145 | 1..864 | 99 | -> | Plus |
| 2R | 24762202..24762459 | 865..1112 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:30 Download gff for
UFO11455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20649725..20649982 | 865..1112 | 91 | | Plus |
| arm_2R | 20648802..20649668 | 1..864 | 99 | -> | Plus |
