UFO11457.5prime Sequence
1197 bp (1028 high quality bases) assembled on 2012-05-17
> UFO11457.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAATGGAT
CCATACATTATACGAAGTTATCAGTCGACATGTCTGCCCCTCCTCCAACA
ACACCTGCGCCCACGGCTGCAGCTTCCGCCGGAAAGGGTCTTCACTCCAG
GGCATATAATGGACTTATCAAGGCCTGCGACAAGTATGTGCCCCCCAAGA
TGCGACCCTTGTGGATGCACCCAGCAGGACCCAAGACCATATTCTTTTGG
GCTCCAATCGTTAAGTGGAGCCTCGTTATCGCGGGTCTCAGTGATTTGAC
GCGTCCTGCGGACAAGATTTCGCCTAACGGATGTCTGGCTCTTGGGGCAA
CGAACCTCATCTGGACGCGCTACTCTCTGGTGATCATTCCCAAGAACTAC
AGCTTGTTCGCGGTTAATCTCTTCGTGAGTCTGACGCAGCTCTTCCAATT
GGGTAGGTACTACAACTACCAGTGGGAGCAGTCGAGGCTGGAGAAAAATG
GCGAGCAATGCCCGGCTATTGAAGCCAGTTTGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGT
TTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACAT
ATTCTCAATAACCCTTTAGGAAATAGGCCAGCTTTCACCGTACACGCCAC
ATCTTGCGAATATATGTGTAGAACTGCGGAAATCGTCGTGTATTCACCTC
CAGGGCGATGAAACGTTTCAGTTGCTCATGAACGGTTACAGGTGAACACT
ATCCATATCACCAGCTCACCGTCTTCATGCCAACGAAGTCGATGACA
UFO11457.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9396-RA | 681 | CG9396-RA | 157..609 | 80..532 | 2250 | 99.8 | Plus |
| CG9399-RE | 1108 | CG9399-RE | 119..423 | 123..427 | 385 | 75.5 | Plus |
| CG9399-RD | 1017 | CG9399-RD | 331..635 | 123..427 | 385 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9570486..9570750 | 532..268 | 1325 | 100 | Minus |
| 3R | 32079331 | 3R | 9571231..9571379 | 228..80 | 730 | 99.3 | Minus |
| 3R | 32079331 | 3R | 9572596..9572666 | 427..357 | 250 | 90.1 | Minus |
| 3R | 32079331 | 3R | 9571133..9571176 | 268..225 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:50:41 has no hits.
UFO11457.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:47 Download gff for
UFO11457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9396-RA | 151..609 | 71..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:34 Download gff for
UFO11457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9396-RA | 151..609 | 71..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:27 Download gff for
UFO11457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9396-RA | 151..609 | 71..532 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:27 Download gff for
UFO11457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9570486..9570749 | 269..532 | 100 | <- | Minus |
| 3R | 9571133..9571173 | 228..268 | 100 | <- | Minus |
| 3R | 9571232..9571385 | 71..227 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:34 Download gff for
UFO11457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5396208..5396471 | 269..532 | 100 | <- | Minus |
| arm_3R | 5396855..5396895 | 228..268 | 100 | <- | Minus |
| arm_3R | 5396954..5397107 | 71..227 | 96 | | Minus |
