UFO11459.5prime Sequence
1136 bp (1030 high quality bases) assembled on 2012-05-17
> UFO11459.5prime
CAGTCGACATGGACTTGAAAATGGAGCTGGGCGGCTACGTGCACTCCGCA
CCCAACACCAAGCGCTTCGTTGTGGAGGACTCGATTACCAAGGTGACCTC
TGATGGGGAGCCGCACGGCATGATGACCATGGTGGCCGGATTATCCGGCC
TTTTGGCGGCCATCATCATTTTGGCCGTCCTCGTGTCCATGGTATCTTGT
CGCAAGCAGAAGAGCACCAACCGGAAGAGCAATTCCTCCGCCAATGTGGT
GGCCATGACCAGTGTGGCGCAGGATCAGCCCCAGTTGGCCGGTAACTTGA
ACGCAGCGTTCGCTGAGAGCACTCTGACCTTGGACAAGGTCAAGCAGGAC
ACAGAGGATCAATGGCGACCCACAGCCGTGGTGGTGGAGCGGTACGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAAATAGGCCAGGT
TTTCACCGTACACGCCACATCTTGCGAATATATGTGTAGAACTGCCGGAA
ATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTGCTCATGG
AAAACGGTGTAACAAGGTGAACACTATCCCATAATCACAGCCTCACGTCT
TTCATGCATACGAATTCCGATGACAATCATCAGGCGGCAGGAATGTAATA
AGGCCGATAACTGGCCTTATTTTCTTTACGCCTTAA
UFO11459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13012-RE | 1199 | CG13012-RE | 585..973 | 7..395 | 1945 | 100 | Plus |
| CG13012-RD | 740 | CG13012-RD | 126..514 | 7..395 | 1945 | 100 | Plus |
| CG13012-RC | 1234 | CG13012-RC | 620..1008 | 7..395 | 1945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16669044..16669226 | 395..213 | 915 | 100 | Minus |
| X | 23542271 | X | 16669313..16669442 | 214..85 | 650 | 100 | Minus |
| X | 23542271 | X | 16670057..16670134 | 84..7 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:50:13 has no hits.
UFO11459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:41 Download gff for
UFO11459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13012-RB | 105..497 | 1..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:17 Download gff for
UFO11459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13012-RC | 613..1008 | 1..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:15 Download gff for
UFO11459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13012-RC | 613..1008 | 1..395 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:15 Download gff for
UFO11459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16669044..16669224 | 215..395 | 100 | <- | Minus |
| X | 16669313..16669442 | 85..214 | 100 | <- | Minus |
| X | 16670057..16670138 | 1..84 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:17 Download gff for
UFO11459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16563077..16563257 | 215..395 | 100 | <- | Minus |
| arm_X | 16563346..16563475 | 85..214 | 100 | <- | Minus |
| arm_X | 16564090..16564171 | 1..84 | 96 | | Minus |
