UFO11463.5prime Sequence
1106 bp (1012 high quality bases) assembled on 2012-05-17
> UFO11463.5prime
CAGTCGACATGTTCCAACATTTCAAGCAGATCTATGCTGGGCTGGGTGTC
AGTTCTCTGATGGTCACCCTGGCCATCCTACTGCTCCTTCAGCCCGTGGA
TGCACGCTGGACTCGCAGACCCAGGCGTACCACCACGCCAAGGAGCACCA
CAAGCATAACCACCGCGAATCCGGATCGTCATCAGCATGTGCACCACTGG
CCACCATTGGTGGCACCACCGCCACAGCCTCAACCACAGCCACCAGTGGT
TGTGGTGCAGAAGCCAAGTCACACGGAGACCAGTCCCCGTCTCGTCGATA
GCTTCGATCAGAGATCACTGGACGGGCAGTACGAGTTCAGATATCAGCTG
GATAATGGCAACACGCGATATGAGCGCGCCTACTGGCTGCCCGTGGGCAA
GGATCTCGTTCTGGCCAAGAAGGGATACTATTCGGTGCCACTGCCAAACG
ACAAGTACTCCACGGTGTTCTACACCGCCGATCATCGTGGCTACCATGTG
GACATGCAGACATTATCCGTAGAGCAGCCGCTATTGCCGCGCAGCCTGGA
AGTGCCCGGAGTGGAAAGGGATGTGGGATCGGGAATGGGAATGGGCACCG
GAATAGCCACGGGTACGGGGACTAAGCGAAATTCAATAAGCGACCCGGAG
CGTAACGAGCTGCCTGTGGAAGTGGAAGTGAATGAGGCTGAGGATGTGGA
TGTGGATGTGGACGCAAGTGATGCTGGCACCGAGCTGGTTCCTAATGCTG
TAAACCAAGTCGAAACCGAAACCGAACCATCAACTTTGGCCAACGACATT
TTGGCAACTGGAGCACCAGCCGACAGCCATGATGATGATCACGATGACGA
TGGCGATGAGGATGGGGATGACGATGTGATGATGATGAAAGCGCTCAACG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATA
ATCATAATCATAATCATAATCATTATCACACTAGCTAGGAGATCCTGGTT
CATGACTAGTGCTGATTCCTCACCAATAAAAACGCCCGCCGCACGAGCGT
CTGAACAAATTCTAATGGAGACTGAGTCATTACTGAATCTATCAACGGAA
TCCAAG
UFO11463.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15756-RA | 1369 | CG15756-RA | 72..960 | 7..894 | 4405 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13534471..13534804 | 7..340 | 1670 | 100 | Plus |
| X | 23542271 | X | 13535098..13535337 | 508..747 | 1200 | 100 | Plus |
| X | 23542271 | X | 13534863..13535032 | 338..507 | 850 | 100 | Plus |
| X | 23542271 | X | 13535645..13535793 | 747..894 | 680 | 98.7 | Plus |
Blast to na_te.dros performed 2014-11-28 02:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1967..2036 | 183..250 | 120 | 65.7 | Plus |
UFO11463.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:50 Download gff for
UFO11463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15756-RA | 1..892 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:44 Download gff for
UFO11463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15756-RA | 65..965 | 1..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:35 Download gff for
UFO11463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15756-RA | 65..965 | 1..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:35 Download gff for
UFO11463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13534464..13534804 | 1..340 | 98 | -> | Plus |
| X | 13534866..13535032 | 341..507 | 100 | -> | Plus |
| X | 13535098..13535336 | 508..746 | 100 | -> | Plus |
| X | 13535645..13535798 | 747..898 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:44 Download gff for
UFO11463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13428497..13428837 | 1..340 | 98 | -> | Plus |
| arm_X | 13428899..13429065 | 341..507 | 100 | -> | Plus |
| arm_X | 13429131..13429369 | 508..746 | 100 | -> | Plus |
| arm_X | 13429678..13429831 | 747..898 | 98 | == | Plus |
