UFO11468.5prime Sequence
1139 bp (1039 high quality bases) assembled on 2012-05-17
> UFO11468.5prime
CAGTCGACATGTTCGGACACTTTAAGCTCGTCTATCCGGCTCCTATATCG
GAGCCCATACAGTCTAGGGATTCGAATGCATACATGATGGAGACGCTGCG
AAATTCGGGCTTGAATTTGAAGAACGATTTCGGTATAGGCCGCAAGATTT
GGAGGGTGTTTTCGTTCACCTACAATATGGTGATACTTCCCGTAAGTTTC
CCAATCAACTATGTGATACATCTGGCGGAGTTCCCGCCGGAGCTGCTGCT
GCAATCCCTGCAACTGTGCCTCAACACTTGGTGCTTCGCTCTGAAGTTCT
TCACTCTGATCGTCTATACGCACCGCTTGGAGCTGGCCAACAAGCACTTT
GACGAATTGGATAAGTACTGCGTGAAGCCGGCGGAGAAGCGCAAGGTTCG
CGACATGGTGGCCACTATTACAAGACTGTACCTGACCTTCGTCGTGGTCT
ACGTCCTCTACGCCACCTCCACGCTACTGGACGGACTACTGCACCACCGT
GTTCCCTACAATACGTACTATCCGTTCATAAACTGGCGAGTCGATCGGAC
CCAGATGTACATCCAGAGTTTTCTGGAGTACTTCACCGTGGGTTATGCCA
TATATGTGGCCACCGCCACCGATTCCTACCCTGTGATTTACGTGGCAGCC
CTGCGAACTCATATTCTCTTGCTCAAGGACCGTATCATTTACTTGGGCGA
TCCCAGCAACGAGGGTAGCAGCGACCCGAGCTACATGTTTAAATCGTTGG
TGGATTGTATCAAGGCACACAGAACCATGCTAAATTTTTGTGATGCCATT
CAACCAATCATCTCTGGCACGATATTTGCCCAATTCATCATATGCGGATC
GATCCTGGGCATAATTATGATCAACATGGTATTGTTCGCTGATCAATCGA
CCCGATTCGGCATAGTCATCTACGTTATGGGCCGTCCTTCTGCAGACTTT
TCCGCTTTGCTTCTACTGCAACGCCATCGTGGACGACTGCAAGACTGCCA
CGCCACTTTTCCATTCCGCCTGGTGGGGTGCAGACAGCGAATACCAGCGG
AACTGTCCTCCAGTTCCTGCAGAACCTGCAGCAGCCCATGACCTCACCCC
CATGAACATATTTAACATTATTGCACTTAACTCATGTAG
UFO11468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or43b-RA | 1412 | CG17853-RA | 62..1175 | 9..1120 | 5260 | 98.7 | Plus |
| Cul1-RB | 3886 | CG1877-RB | 3442..3779 | 1120..785 | 1380 | 95.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7921768..7922543 | 784..9 | 3880 | 100 | Minus |
| 2R | 25286936 | 2R | 7921135..7921472 | 1120..785 | 1195 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:51:14 has no hits.
UFO11468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:53 Download gff for
UFO11468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or43b-RA | 62..1186 | 9..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:54 Download gff for
UFO11468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or43b-RA | 62..1186 | 9..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:43 Download gff for
UFO11468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or43b-RA | 62..1186 | 9..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:43 Download gff for
UFO11468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7921124..7921472 | 785..1127 | 94 | <- | Minus |
| 2R | 7921768..7922543 | 9..784 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:54 Download gff for
UFO11468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3808629..3808977 | 785..1127 | 94 | <- | Minus |
| arm_2R | 3809273..3810048 | 9..784 | 100 | | Minus |
