UFO11469.5prime Sequence
1203 bp (1052 high quality bases) assembled on 2012-05-17
> UFO11469.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAAATAGACCA
TACATTATACGAAGTTATCAGTCGACATGACCATCTTTAACCTGTACATA
TTCGACAAGTTCGGAACACTGCTCCACTACGCAGAATGGAATCGCACCAA
GAAATCGGGCATCACACGCGAGGAAGAAGCCAAACTCACCTACGGAATGC
TCTTCTCCATAAAGTCCTTCGTCAGTAAGATATCGCCACACGATCCCAAG
GAGGGCTTCCTTTACTACAAGACCAATCGCTACGCCCTGCATTATCTGGA
AACTCCCTCTGGATTAAAGTTCGTTCTCAACACGGACACGACGGCCATCA
ATGTGAAGGAGCTGCTACAGCAGTTGTACGCCAAGGTGTGGGTAGAGTTC
GTCGTGCGAGATCCACTGTGGACACCCGGCACGGTGGTCACCTCGGAGCT
GTTCCAGTCCAAGCTCGATGAGTTCGTCAGGCAGTCACCCATCTTCGGCA
TTCGCAATATAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG
GGGCGAAGAAGTTGTCCATATTGGGCCACGTTTAAATCAAACTGGTGAAA
CTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTT
AGGAAATAGGCCAGGTTTCACGTAACACGCCACATCTTGCGAATATATGT
GTAGAACTGCCGGAATCGTCGTGTATTCACTCCAGAGCGATGAAACGTTC
AGTTTGCTCATGAAAACGGTGTTAACAGGTGAACCTATTCCATAATCACA
GCTCACCGTCTTCATGGCAACGAATCAGGATGACCATTCATCAGGCGGCC
AAA
UFO11469.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bet5-RA | 1051 | CG1359-RA | 125..559 | 77..511 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30180802..30180994 | 319..511 | 965 | 100 | Plus |
| 3R | 32079331 | 3R | 30180509..30180653 | 176..320 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 30180356..30180455 | 77..176 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:51:18 has no hits.
UFO11469.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:53 Download gff for
UFO11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet5-RA | 69..512 | 70..515 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:55 Download gff for
UFO11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet5-RA | 119..562 | 70..515 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:45 Download gff for
UFO11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet5-RA | 119..562 | 70..515 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:45 Download gff for
UFO11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30180356..30180454 | 77..175 | 100 | -> | Plus |
| 3R | 30180509..30180651 | 176..318 | 100 | -> | Plus |
| 3R | 30180802..30180994 | 319..511 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:55 Download gff for
UFO11469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26006078..26006176 | 77..175 | 100 | -> | Plus |
| arm_3R | 26006231..26006373 | 176..318 | 100 | -> | Plus |
| arm_3R | 26006524..26006716 | 319..511 | 100 | == | Plus |
