UFO11470.5prime Sequence
1082 bp (999 high quality bases) assembled on 2012-05-17
> UFO11470.5prime
CAGTCGACATGACCTCCCAAGAAACGCAGACTGAGGGTGAACGTAGGAGG
GTAACTCTTCCATCTTCGACACCAGATAAAGGTACACCATCCAAAAAAGG
CAGCGAGGAGCCCAACCGAATTTCGAACACAGAGTTCCAAAAAAGAGTAA
CATCGGACAGAAGCGATGAGCCGGTCTTCAGCTGCCAATTCGAAGTGTTC
GGCATTGTGCAAGGCGTTTCATTTCGAATGTACACCTTGCGAAGAGCTCA
AAAGCTGGGAGTCCGGGGTTGGTGCAAAAACACCAACGAGAATACGGTGA
AGGGCGAAATTCAAGCACACCGACATTCCTTTGAGTCCATGCGCCTCTGG
CTAAAGCACACCGGCAGCCCCACCAGTCGAATTGACAAATGCATTTTCAG
TGAGACTACAGAACTTTCAGAATTCACGTTCACTAACTTCTCCATAGTGG
TGGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
GCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCG
AAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGTGAAACTCACC
CAGGGATTGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAATA
GGCCAGTTTCACCGTAACACGCCACATCTGCGAATATATGTGTAGAACTG
CGAATCGTCTGTATCACTCAGAGCGATGAAACGTTTCAGTGCTCATGAAC
GGTGTAACAGGTGACCCTATCATATCACCAGC
UFO11470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11052-RD | 605 | CG11052-RD | 22..468 | 9..455 | 2235 | 100 | Plus |
| CG11052-RC | 761 | CG11052-RC | 178..624 | 9..455 | 2235 | 100 | Plus |
| CG11052-RB | 695 | CG11052-RB | 112..558 | 9..455 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8008846..8009051 | 214..9 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 8008386..8008500 | 455..341 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 8008551..8008662 | 341..230 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:50:45 has no hits.
UFO11470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:47 Download gff for
UFO11470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11052-RA | 1..452 | 9..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:37 Download gff for
UFO11470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11052-RB | 107..563 | 3..463 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:29 Download gff for
UFO11470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11052-RB | 107..563 | 3..463 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:29 Download gff for
UFO11470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8008386..8008500 | 341..455 | 100 | <- | Minus |
| 3R | 8008552..8008661 | 231..340 | 100 | <- | Minus |
| 3R | 8008776..8008792 | 214..230 | 100 | <- | Minus |
| 3R | 8008847..8009056 | 3..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:37 Download gff for
UFO11470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3834108..3834222 | 341..455 | 100 | <- | Minus |
| arm_3R | 3834274..3834383 | 231..340 | 100 | <- | Minus |
| arm_3R | 3834498..3834514 | 214..230 | 100 | <- | Minus |
| arm_3R | 3834569..3834778 | 3..213 | 98 | | Minus |
