UFO11472.5prime Sequence
1091 bp (1002 high quality bases) assembled on 2012-05-17
> UFO11472.5prime
CAGTCGACATGCAGCCAGGATTTACGGAGCGAATGCGAGACCATCTAATG
CTCATTGAAATTTACGATTATGCTGCGAAATTATTAAACAATATGACCGC
CAGAGGAGTCAGGAATTCAGTGGGAAAATCAGCCGAGAGCCGTACTAAGG
AATCAACAGGGAAATTGGGCAGCCTGCTTGGCCGCACACTGGCCAAAGTG
GCCAAAGTGGCCCGCTCCAATCCCGCCCAGCACGTGACCAATCTGCCCGT
TTCCGCACTCCTGCTCCAGGCCCTCGACGTGGCGGACGTGGCCCGCGGAC
AGGGAATCGATTATCCCATCACTAGCACCACCGGGACCACCTTCAACATT
ATCACCACCACCACCACCACCACCACCACCACCACGGGCAGTGACCCAAC
GGATGTGCTCGGCAGTCAGCCGCCGGCGTTCTCATTTCCCGCCAACGTCA
CTGGAGCACCGGGAAGTGCGGGGAATGCGAACGCATACCTGCCCGCGGGC
AATCTCAGCGGTTTCATCGAATCCTCAACAACGGCGGTGATGAGCACACT
GCCCATACCCACCAGCACCATGGCCACGCTCCAGGCCCAAACGGTGGCCA
CTTTCATCGCCGCCACCGGCAGCAAGAATCGCCCAACGACCATCGTTGTC
TACCCAACGGTTTCACCCGAATCGATTGTCATCCCGATCGTCTCCTGTAT
CTTCGGCTTCCCCATCCTGGCGCTTCTGGTGATCTGTTGCCTTCGAAAGA
GGGCCAAGTTGGCCAGGGAGAGGGATAGGAGGCGTAACTACGATATGCAG
GACCATGCCGTCAGCCTGGTCAGATTTAGTCCAATACATAGGCTTAATTA
CCGATCGTCGCGAGCTATCAGTCTACGTCCTGAACGAAGCCTAAGCCAGG
GCTTCACTCTCTGGAGCTGGACACTGTGCTGAGGAGCGCTGCAGCGACGT
GAGCAAACGCAGACGAGATGTCACGCGAGTCACGATGACACACTCTACAG
ATGTCTTCTCTCGAGCGCAGCTTCTAGACATTCGGTGGCGCCGGCAGTAT
TGTCATATCTATCTATCATATCTATTACACTAGCTAGGAAT
UFO11472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43740-RC | 1878 | CG43740-RC | 101..1117 | 15..1016 | 4695 | 98.4 | Plus |
| CG43740-RA | 1878 | CG43740-RA | 101..1117 | 15..1016 | 4695 | 98.4 | Plus |
| CG43740-RB | 1850 | CG43740-RB | 101..904 | 15..818 | 4005 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10335799..10336451 | 8..660 | 3265 | 100 | Plus |
| X | 23542271 | X | 10343870..10344056 | 660..846 | 920 | 99.5 | Plus |
| X | 23542271 | X | 10346849..10346970 | 847..965 | 460 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:50:49 has no hits.
UFO11472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:48 Download gff for
UFO11472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15307-RA | 1..913 | 93..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:39 Download gff for
UFO11472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43740-RA | 96..1091 | 7..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:31 Download gff for
UFO11472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43740-RA | 96..1091 | 7..996 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:31 Download gff for
UFO11472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10335793..10336451 | 1..660 | 99 | -> | Plus |
| X | 10343871..10344056 | 661..846 | 99 | -> | Plus |
| X | 10346849..10346997 | 847..987 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:39 Download gff for
UFO11472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10229826..10230484 | 1..660 | 99 | -> | Plus |
| arm_X | 10237904..10238089 | 661..846 | 99 | -> | Plus |
| arm_X | 10240882..10241030 | 847..987 | 94 | | Plus |
