UFO11473.5prime Sequence
1097 bp (983 high quality bases) assembled on 2012-05-17
> UFO11473.5prime
CAGTCGACATGTCTAAAGGCACGGGACCCTTGTCTAAGTTGTACAATATT
ACCATCAGTACTATTGATAAATTTGTTCCAGGCGCAGTTCAGCCACTTTG
GCAATCCCCAGCTGGACCCCGTACTGTGTTTTTTTGGGCACCAGCGTTTA
AATGGTCCTTGGTGCTGGCTGGGCTGAGCGATACGCTAAGTCGTCCTCCT
GCCAATATATCGCTGAATCAATGCGGCTCCTTGGCAGTCACGGGCTTAAT
TTGGTCTCGCTACTCAGTGGTTATCACACCCAAGAACTACAATCTTCTGG
CCGTCAACATAGCCGTCTTTCTCATCCAGGGTTATCTAATGGTCAAGCAC
CTAAGGTGGCGCAGCGAGAACTCTCGGAATGCGGTGTTCAATCATTCGCA
CTACCCAATCAAATCAGGAGATGATTGGGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
ATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATAT
TCTCATAAACCCTTTAGGAAATAGGCCAGGTTTTCACCGTACACGCACAT
CTTGCGATATATGTGTAGAACTGCGAAATCGTCGTGTATTCACCTCCAGA
GCGATGACACGTTCAGTTGCTCATGGAACGGTGTAACCAGTGAACACTAT
CCATATCACAGCTCACGTCCTCATGGCATACGAAGTCTATGAACTCT
UFO11473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32832-RB | 772 | CG32832-RB | 75..494 | 9..428 | 2100 | 100 | Plus |
| CG32832-RA | 675 | CG32832-RA | 75..494 | 9..428 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16878604..16878877 | 428..155 | 1370 | 100 | Minus |
| 2L | 23513712 | 2L | 16879110..16879216 | 115..9 | 535 | 100 | Minus |
| 2L | 23513712 | 2L | 16879017..16879058 | 155..114 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:51:29 has no hits.
UFO11473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:55 Download gff for
UFO11473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32832-RA | 60..482 | 9..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:03 Download gff for
UFO11473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32832-RA | 75..501 | 9..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:51 Download gff for
UFO11473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32832-RA | 75..501 | 9..433 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:51 Download gff for
UFO11473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16878604..16878876 | 156..428 | 100 | <- | Minus |
| 2L | 16879017..16879057 | 115..155 | 100 | <- | Minus |
| 2L | 16879111..16879216 | 9..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:03 Download gff for
UFO11473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16878604..16878876 | 156..428 | 100 | <- | Minus |
| arm_2L | 16879017..16879057 | 115..155 | 100 | <- | Minus |
| arm_2L | 16879111..16879216 | 9..114 | 100 | | Minus |
