UFO11474.5prime Sequence
1106 bp (1006 high quality bases) assembled on 2012-05-17
> UFO11474.5prime
CAGTCGACATGTCTAAAAGCAACGCATCTGTGGAAGGTCCCCGTTTTGAG
GAGCACCTAGTCTGTCCATTCGATGGATTACATCGCATATTGCCGCTCGA
TATGAAGACGCACGTGTTGCAGTGCGCCAAGAACTTTCCTTTGGAAAAGT
TGGTGCACTGTCCATATAACTGCGGTCAAATACACTCGGTTGCCGAAATG
GAGAATCATATCAATGATTGTCCAGACCGAGCATATTTGGAGCGCAACAA
TGTGCCTAGTGATGAGTTGCCTTCTTTGGCACAGCGACCGCGTGGTGTTG
AGGTGGAGAGCGAAGAGGATTGGGATGCCGAACCGCCATCTCAGACGTAC
AACCCTAGTCTTCACTGCGAGAGGAGCATGGTTATCCGTACCATACATGG
AGCTACACGATCCGCTCGTCGAGAATTCCGCAAACGCGAGCAAAAGCGAT
TAAATGATTTAAATCCAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCATAAAC
CCTTTAGGGAAATAGGCCAGGTTTCACGTTACACGCCACATCTTGCGAAT
TATATGTTGTAGAACTGCCGAATCGTCTGGTATTCCCCTCCAGAGGCGAT
GAAACGGTTTCAGTTGGCTCATGAAACGGTGTTACCAGTGACACTATCCC
ATATCA
UFO11474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34283-RA | 567 | CG34283-RA | 69..527 | 9..467 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18722007..18722272 | 467..202 | 1330 | 100 | Minus |
| 3R | 32079331 | 3R | 18722328..18722522 | 203..9 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:51:33 has no hits.
UFO11474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:56 Download gff for
UFO11474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34283-RA | 1..462 | 9..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:04 Download gff for
UFO11474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34283-RA | 1..462 | 9..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:53 Download gff for
UFO11474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34283-RA | 60..527 | 1..467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:53 Download gff for
UFO11474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18722007..18722270 | 204..467 | 100 | <- | Minus |
| 3R | 18722328..18722530 | 1..203 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:04 Download gff for
UFO11474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14548050..14548252 | 1..203 | 98 | | Minus |
| arm_3R | 14547729..14547992 | 204..467 | 100 | <- | Minus |
