UFO11475.5prime Sequence
1113 bp (987 high quality bases) assembled on 2012-05-17
> UFO11475.5prime
CAGTCGACATGCGTCACTTTACCGTGCTAGTATCCTGCATCCTGATAGTT
ATATTGCCATGCGTGTTAGGGGCTCACAGGACAGCTCTCAAGAGTCATTA
TAGAAGCTTTGTGAAACCAAAGCAGAATGTCATACGGGCTAGAACCAATC
AAACAACACAACTTACATTAGGAGACTATACGGAAAACTTTTATAAACAC
TGCATGGATATTTTCAAAGAGAAAAACTTGGTTGGTAAAGTGATCCATGG
CATGATCAGTGGAATTTTAGACAGGCTCAATGAAGTGTGCCTCGACAAGC
CCATTCACCCACTTATCCACAAAGTTTTCACGGAAATCCTTCTCTGTGGC
GGAAGCATGTCGGATGCAATCGATAGCGTCATTGACATATTATTTGGAAA
TTTGGAAAGAAATTGCAGGGAGAGGCCTGGATTCAATAGCTATTATATTT
TAACCAGTGCGGAAAACGAAATAGTTGAATCAAAAGGTGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTTGTCGCCTTGCG
TATATATTTGCCCATGGTTGAAACGGGGGCGAAGAGTTGTCCATATTGGC
CACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAA
AACATTTTTTTCAATAAACCCTTTAGGGAAATAGCCAGTTTTCACCGTAC
ACCGCCACATTTTGCGATTTTTTGTGTTAGAACTGCGAATCGTCTGTATT
TCACCTCAGAGCGATGAAACGTTTCAGTTTGCTCATGAAACGGTGTTACA
GGGGTGAACCTAT
UFO11475.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp84E-RA | 685 | CG42484-RA | 30..509 | 9..488 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7979764..7980241 | 488..11 | 2390 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1b | 5171 | Rt1b RT1B 5150bp | 3972..4068 | 65..161 | 125 | 58.8 | Plus |
UFO11475.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:57 Download gff for
UFO11475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp84E-RA | 30..512 | 9..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:07 Download gff for
UFO11475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp84E-RA | 30..512 | 9..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:55 Download gff for
UFO11475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp84E-RA | 30..512 | 9..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:55 Download gff for
UFO11475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7979764..7980241 | 11..488 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:07 Download gff for
UFO11475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3805486..3805963 | 11..488 | 100 | | Minus |
