UFO11476.5prime Sequence
776 bp (697 high quality bases) assembled on 2012-05-17
> UFO11476.5prime
CAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAGAGCGGAAG
CGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAATGCGAACTT
CTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCCATCGGGTG
CCCGAGGATCTCACTCTGATACGCCGGCAAAGCGCACCTTCGATGCCAGA
AACACGATCGCCGCGAAGACACGGGCCAAGATAGCCGATGCCCGGGATCT
GATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCAGCTGTTGC
TGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTGATGACGAA
GAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGAGTGCACAT
CGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGGACAGCACCT
TTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGGGTAAACCA
CATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCATAAGCCGG
GCAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATATGCAGACCT
CGAGGATGAGGAAATATCTCGCACACTGCACTTACGGCAAATGAAGCAAG
CGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGCGCGACGACG
TGAGATGTCCATGGCCCCACTAATAACAAATAGATAACATGCATTCCTCC
TATTTACAGGCGCCCGCAATCGCATT
UFO11476.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18259-RA | 2055 | CG18259-RA | 119..893 | 8..776 | 3545 | 98.1 | Plus |
| CG6961-RA | 1894 | CG6961-RA | 150..924 | 8..776 | 3470 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18782713..18783233 | 608..89 | 2430 | 99 | Minus |
| X | 23542271 | X | 18787398..18787918 | 608..89 | 2355 | 98.1 | Minus |
| X | 23542271 | X | 18782539..18782656 | 723..608 | 475 | 97.5 | Minus |
| X | 23542271 | X | 18787224..18787341 | 723..608 | 475 | 97.5 | Minus |
| X | 23542271 | X | 18783296..18783376 | 88..8 | 405 | 100 | Minus |
| X | 23542271 | X | 18787981..18788061 | 88..8 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:51:41 has no hits.
UFO11476.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:57 Download gff for
UFO11476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18259-RA | 108..890 | 1..776 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:10 Download gff for
UFO11476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18259-RA | 111..893 | 1..776 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:57 Download gff for
UFO11476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18259-RA | 111..893 | 1..776 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:57 Download gff for
UFO11476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18782483..18782655 | 609..776 | 94 | <- | Minus |
| X | 18782713..18783233 | 89..608 | 99 | <- | Minus |
| X | 18783296..18783379 | 1..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:10 Download gff for
UFO11476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18677329..18677412 | 1..88 | 95 | | Minus |
| arm_X | 18676516..18676688 | 609..776 | 94 | <- | Minus |
| arm_X | 18676746..18677266 | 89..608 | 99 | <- | Minus |
