UFO11477.5prime Sequence
1107 bp (1007 high quality bases) assembled on 2012-05-17
> UFO11477.5prime
CAGTCGACATGAAAGCTCTTCAAGTCGCCGGAACTTTGATGCTGCTTTTC
TGCCTGCTGGCAGCTGTTAATGCTACGCCGGGACAAGTGTATATCAATGG
GAAATGCATTGACTGCAATAAGCCTGATAATGATCCGGGAATTATAATTC
CTCCAGACCATAAATCAGCTGGATCCATGTCTTACACACTCACATCTGGA
GCCATCTTCTTTGGAATTATATATCATATATTCAGTGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCG
TAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTC
GTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAA
CGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTC
ATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGGCAGATGTGATA
ACGCCGGATAAACTTGTGCTTATTTTTCTTACGTCTTAAAGCGTATATCA
GCTGACGGTCTGATTATAGTACATGAGCACTGACTGAATGCTCAATGTTC
TTACGATGCAATGGATATTCACGTGCATCAGGATTTTCTCCAATTAGCTC
TAGTCTG
UFO11477.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16836-RA | 383 | CG16836-RA | 104..333 | 7..236 | 1150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18389229..18389393 | 72..236 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 18389098..18389163 | 7..72 | 330 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:51:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 805..872 | 123 | 68.1 | Plus |
UFO11477.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:58 Download gff for
UFO11477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16836-RA | 4..239 | 7..244 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:12 Download gff for
UFO11477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16836-RA | 104..339 | 7..244 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:00 Download gff for
UFO11477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16836-RA | 104..339 | 7..244 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:00 Download gff for
UFO11477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18389098..18389163 | 7..72 | 100 | -> | Plus |
| 2R | 18389230..18389393 | 73..236 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:12 Download gff for
UFO11477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14276603..14276668 | 7..72 | 100 | -> | Plus |
| arm_2R | 14276735..14276898 | 73..236 | 100 | == | Plus |
