UFO11483.5prime Sequence
1124 bp (1016 high quality bases) assembled on 2012-05-17
> UFO11483.5prime
CAGTCGACATGATGGCTGTCCGTTTGTCTCTGATTTGGCTGCTTCTGCTG
GGCACTTCCATTGACGTCACGCGCGGAAAGCGTTTGGACAATCGTAAACT
TTTGGACAATCGCATTGTGGGTGGCCAGGAGGCGGAGGACGGAGTGGCAC
CTTATCAGGTGTCCATTCAGACCATCTGGAAAACCCACATCTGCAGCGGA
GTCATTCTCAACGAACAGTGGATCCTCACCGCGGGTCATTGTGCACTGGA
CTTTAGCATCGAGGATCTAAGGATTATAGTGGGCACGAATGATCGTCTGG
AGCCAGGACAGACCTTATTTCCGGACGAGGCCCTAGTCCATTGCTTGTAC
GACATACCCTATGTCTACAATAATGACATAGCGTTGATCCATGTCAACGA
GTCGATTATATTCAATGATCGCACCCAGATCGTTGAGTTGAGCCGAGAGC
AACCTCCGGCGGGTTCCACGGTCACTCTGACGGGATGGGGTGCTCCGGAA
AGTAGCTATCCCACAGTGCAATATCTGCAGACCCTCAACCTGACCATCAT
CGCACACGAGGAGTGCAGAGAGAGATGGGACTTTCACGATGGCATCGACA
TCGGTCATATTTGCACCTTTACGCGAGAGGGCGAGGGTGCCTGCTCCGGA
GACTCCGGTGGTCCACTGATGTGGGAGGGCAAACTGGTGGGCCTGGTCAA
CTGGGGCAGAGCCTGCGGCGTCGGCATGCCAGACATGTATGCCAACACGG
TTTACTATCAGGATTGGATCCGCAGGACTCATTCAGGATGCAAGAATCGT
GTTAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTGGAG
ATCCTGGTCATGACTAGTGCTTGATTCTCACAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATTTTTCAACAGGAGTCAAGCGAGCTCGAATATTCAAATTACGCCCCCGA
CTGCCACTCTATCGCAAGTACTGTTTGTTATTTCATAGCCATCTGCGAAC
TGGGAAGCCAATCCCAACGTCATT
UFO11483.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4053-RB | 925 | CG4053-RB | 40..837 | 9..806 | 3990 | 100 | Plus |
| CG31265-RA | 909 | CG31265-RA | 629..750 | 603..724 | 205 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17131429..17132159 | 739..9 | 3655 | 100 | Minus |
| 3R | 32079331 | 3R | 17131299..17131368 | 806..737 | 350 | 100 | Minus |
| 3R | 32079331 | 3R | 17128840..17128961 | 603..724 | 205 | 77.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:51:22 has no hits.
UFO11483.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:54 Download gff for
UFO11483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4053-RB | 1..798 | 12..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:58 Download gff for
UFO11483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4053-RB | 40..840 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:48 Download gff for
UFO11483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4053-RB | 40..840 | 9..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:48 Download gff for
UFO11483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17131432..17132159 | 9..736 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:58 Download gff for
UFO11483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12957154..12957881 | 9..736 | 100 | | Minus |
