UFO11486.5prime Sequence
1131 bp (1030 high quality bases) assembled on 2012-05-17
> UFO11486.5prime
CAGTCGACATGTTTGACCAACCCCCTGAAAACGAACTGCAGAAATCACAT
GACCACAATCCAGGCGCACTAAGCGAGCATCAACTGCGTGTCCAAGCTTC
GCTTCAGCGGCTAAATATTCCCGACTGGTTCCGTCATTACAACAAAGGCC
CCGAAAAGGCAGCAGATGGCGAAAACGCATGCACAAGTGCGACTGGCGGT
GGTTACCGACCTGGCAACTTCACCCGCAAACGCGCACAGGAATCGGGTCG
CTGGCAAGGGCTCAACTCAAAGACGACTTCCCTCAGCTCGCTGGGATCTC
AACGCTCCGACCGAAGTCCTTTGTTGATGAGTCCCTCAGCGCACAGTCAT
CACGGCGGCCAAAGCTCCTATTCATGTGGGTCGACGACAATTCACGGTCC
GGCACCTGTACAGATAGGCATGGGTGCAACTCGCTGGTCAACCTCTCATC
TGAATTCCACTCAGATGTCTCCCGGTGCCTCGCAGCGCGGAAGCTTTACG
CGCGGCGCCCCCATTAATAGCAGCTTTATATCTGTGGCCAGTGGTAGTGG
CTTGTTGCGCAATTCCTACCGACAGCCGTATTTGGGTTGGCGCAGCACAG
AGAAGCTCTCCCAACGAACTCCCCACGAACGTCTGGCCAATTCGCTGCTA
ACCCAACGGACAGCTCCGCCCTCCACACGGGCGGGCAATGAAACCCGCAC
CTTACATTCTGTATCGACAGAGATTCAAAGCTCCATTAAGGAAGTCACAT
CCGCCATCGTTCACTTCGTGAACGACCAGCAGCAGTCCCAACATCCGCGG
AGCCGTTCTACCAGTCCAAATTCAAGGTGCTGGCTGGAAAGCAGCTTTGT
TGGTACACGAACCCTGACTCGCCGCAAACACCCGTCATTGACACAGTCCT
CCCGATTGGCACGAAGCAGCAGCAGCTCCACCCGCACCAGTGCATCTGGA
TGTCGTCTGTCGCCTGTAGTCTCGCTGTCAGCTGCACATCGCATGACGAA
TAAATCGTATCGCACGTGCGCACCGACGATCGTAGCACGCTCGCTAGAAG
ATGTCTAGCCTCGCTATTAGACTACACTAACCTTTAACGCGGAACGCATC
CTACGCAGCTACCTCCAATGGCGCGCACACA
UFO11486.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42748-RF | 4450 | CG42748-RF | 120..1222 | 8..1085 | 4895 | 97.6 | Plus |
| CG42748-RL | 5823 | CG42748-RL | 120..1222 | 8..1085 | 4895 | 97.6 | Plus |
| CG42748-RH | 4308 | CG42748-RH | 120..1135 | 8..1012 | 4805 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22154798..22155408 | 21..631 | 3055 | 100 | Plus |
| 2L | 23513712 | 2L | 22156620..22156817 | 631..828 | 990 | 100 | Plus |
| 2L | 23513712 | 2L | 22158511..22158665 | 825..973 | 475 | 96.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:52:02 has no hits.
UFO11486.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:46:01 Download gff for
UFO11486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42748-RH | 115..1149 | 1..1022 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:22 Download gff for
UFO11486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42748-RL | 115..1222 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:08 Download gff for
UFO11486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42748-RL | 115..1222 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:08 Download gff for
UFO11486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22158513..22158721 | 827..1020 | 92 | -> | Plus |
| 2L | 22154789..22155408 | 12..631 | 99 | -> | Plus |
| 2L | 22156621..22156815 | 632..826 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:22 Download gff for
UFO11486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22154789..22155408 | 12..631 | 99 | -> | Plus |
| arm_2L | 22156621..22156815 | 632..826 | 100 | -> | Plus |
| arm_2L | 22158513..22158721 | 827..1020 | 92 | -> | Plus |
