UFO11487.5prime Sequence
1040 bp (920 high quality bases) assembled on 2012-05-17
> UFO11487.5prime
CAGTCGACATGTCGCTAGATTATGAGAAGATGAGCTGGTCGGATGTACGC
GATCAGTTCAGAACATGGCGCGAGGAAACGGGTCGCCACAGCGAGGAGGT
GGTCCAGCTGTGGGTTGCTGTGCTGGAGGACAAGGTGCACAAGACCGGCA
ACGAGCGGCATCTCATCCTGGAGCAGGTGATCATCGCGGCATTGGATACG
GCTCGCTTTGACATCGCCACCAAGTGTACCAAGCAGCTGGCCCTCGAGTT
CCCGGGCAGCCTGCGCGTGATGAAGTTCAAAGCGATGCGCTACGAGGCCC
TGGAGCAGTACGATGAGGCCGACGAGGTCCTGGATGCAATCATTGCTAAG
GACGAGACAAATGCCGCGCCCAGGAAGCGCAAGATTGCCATCCTTAAGGC
CCGTGGTCGTCGCCTGGAGGCCATCAAGGAGCTCAACGAGTATCTGAAGA
AGTTTATGTCTGACCAGGAGGCATGGCATGAGCTGTGCAACATGTATCTG
GCTGAAGGCGAGTTTGGCAAAGCTGCCTTCTGCATGGAGGAGGTTTTGCT
GCACAATCCGCATAGCCATCTAATACACCAGCGTTTGGCAGAAATACGAT
ACACAATGGGGTGGCGTCGAGAATATGGAATCGGCTCGCACTTACTATTC
GCAGGCCCTGAAGCTTAATCCGCATAACTTGAGGGCCCTTTATGGCATTT
ACTTGTGCTGCAACCATTTGGACAACTCTCGTGCTGTGAGCTCCAACGGA
AGGAGCTGCAAAAGTTGAGTCAATGGGCCCTCGAACAACTTTTGACTAAA
CAAACGATTGTACCCTTGGAGGCTGCCTTTGGAAACCTGAAATTAAATCG
AATGCAAGCTTTCTAGACATTCGTTTGGCGCGGCGGGCCCAGTAAGTGTC
ATATCATATCATAATCATAATCATATCACACTAGCTAGGAGATCCTGTCA
TGACTAGTGCTGATCTCACCAATAAAAACCCCCGGCGCACGAGCGTTCTG
AACAATCGAATGGAGTTCTGAGTCATACTGAATCTATTCA
UFO11487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17556-RB | 1089 | CG17556-RB | 113..958 | 9..853 | 4085 | 99.1 | Plus |
| CG17556-RA | 1230 | CG17556-RA | 113..958 | 9..853 | 4085 | 99.1 | Plus |
| CG3678-RB | 1216 | CG3678-RB | 112..957 | 9..853 | 4070 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16991182..16991593 | 453..42 | 2045 | 99.8 | Minus |
| 3R | 32079331 | 3R | 16995403..16995814 | 453..42 | 1985 | 98.8 | Minus |
| 3R | 32079331 | 3R | 16994814..16995060 | 853..609 | 1135 | 99.2 | Minus |
| 3R | 32079331 | 3R | 16990593..16990839 | 853..609 | 1060 | 97.2 | Minus |
| 3R | 32079331 | 3R | 16995121..16995278 | 609..452 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 16990900..16991057 | 609..452 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:52:06 has no hits.
UFO11487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:46:02 Download gff for
UFO11487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17556-RA | 122..975 | 1..853 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:23 Download gff for
UFO11487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17556-RA | 105..958 | 1..853 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:09 Download gff for
UFO11487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17556-RA | 105..958 | 1..853 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:09 Download gff for
UFO11487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16994814..16995059 | 609..853 | 98 | <- | Minus |
| 3R | 16995122..16995278 | 452..608 | 100 | <- | Minus |
| 3R | 16995405..16995813 | 43..451 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:23 Download gff for
UFO11487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12820536..12820781 | 609..853 | 98 | <- | Minus |
| arm_3R | 12820844..12821000 | 452..608 | 100 | <- | Minus |
| arm_3R | 12821127..12821535 | 43..451 | 98 | <- | Minus |
