UFO11488.5prime Sequence
1160 bp (1034 high quality bases) assembled on 2012-05-17
> UFO11488.5prime
CAGTCGACATGTTACTTATTAATATTGTAGTGCCAACAGAGCATCTCTTT
GTCCTCAGTATTCATAAGTGTGACATTCGTCCATTTGTGGTAGAGGGGAA
ACAAGTTGGTCTTATTAAGTCAGATGTTTTAAAACATCTCGAAAAGTATC
CTGAAGTATTTTGCATTCGTGCTTGTGAGCAAACTAAACAGGGTTTGGTA
GAGCTAAATCCTGCTTTTCGTGACTATAACGAGCGCACTGAGCAACTGGA
AAAGGTTTTGCGTAACTTGCGCTCCGAGGGACTTTTTCCTGCATTACAGG
GATGGAGAGATGAGTATTTCGAGGTAAAAGCAGACTGCAGAGCTCTACTT
AAAATGGAACGAGCTGCTACTCCGCTCTTTGGAGTGCGCAAGTACGGCGT
CGATATAAACGGTTACGTAAGACATCCGACGCTTGGACTATGCATTTGGC
TGCAGCAGCGGTCAAACACAAAAGAGACCTGGCCTGGAAAGTGGGACAAT
ATGGTAGGCGGTGGACTTTCAGTCGGCTTTGGTATTAAGGAAACAGCCAT
TAAGGAGGCTGCAGAGGAGGCATCAATTCCTTCTGACCTAGTCAAGAATT
TGGTGTCCGCAGGATGTGTCTCATTTTACTTTGAAAGCCGACAAGGACTT
TTTCCCAATACCGAATATGTTTTCGACTTAGAGCTACCACTTGACTTTGT
GCCTCAAAACGCTGACGGGGAGGTCCAGGCCTTTGAGCTGCTAACAGCCA
AGGACTGTGTGGGAGCGCGTTTTTACTTCAGATTTCAAGACAACTTCAGC
GCCTGTGGTGATTGATTTTCTTATCCGACACGGTCACATAACAGCAGATG
ATGTTGTCGACTTCACACAAATCGTTGAGCTCTTGCACGTGCCCTTACAG
TCCATATATACGTACAGACACGCTTTGAGCAATCCATAAAACACCTCAAT
TCTTGCCAGGTGATTCCAAAACTGTAACTGTGCAATATTTCAGAAAATAT
CAATGGAGAATGGGCCACAGGGCGATGCAGCTTTCTAGAACATTCGTTTG
GCGCGGCGGGCCCAGGTAGTGGTTCATAATCATATCATATCATATTCATA
TTCACACTAGCCTAGGAATCCTGGTCATGACTAGGTCTGATCTCACAATA
AAAACGCCTC
UFO11488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12567-RF | 1885 | CG12567-RF | 24..1032 | 9..1015 | 4950 | 99.6 | Plus |
| CG12567-RG | 1907 | CG12567-RG | 95..1054 | 58..1015 | 4705 | 99.6 | Plus |
| CG12567-RD | 1875 | CG12567-RD | 63..1022 | 58..1015 | 4705 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23162212..23162876 | 853..188 | 3280 | 99.8 | Minus |
| 2L | 23513712 | 2L | 23323955..23324192 | 853..615 | 1025 | 96.2 | Minus |
| 2L | 23513712 | 2L | 23415916..23416153 | 615..853 | 1025 | 96.2 | Plus |
| 2L | 23513712 | 2L | 23161975..23162140 | 1015..853 | 680 | 98.2 | Minus |
| 2L | 23513712 | 2L | 23162924..23163058 | 192..58 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 23320525..23320637 | 1015..906 | 355 | 93.8 | Minus |
| 2L | 23513712 | 2L | 23174410..23174461 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:52:10 has no hits.
UFO11488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:46:03 Download gff for
UFO11488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RF | 24..1044 | 9..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:25 Download gff for
UFO11488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RF | 24..1044 | 9..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:11 Download gff for
UFO11488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12567-RF | 24..1044 | 9..1025 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:11 Download gff for
UFO11488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23161975..23162139 | 854..1015 | 98 | <- | Minus |
| 2L | 23162212..23162872 | 192..853 | 99 | <- | Minus |
| 2L | 23162925..23163058 | 58..191 | 100 | <- | Minus |
| 2L | 23174413..23174461 | 9..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:25 Download gff for
UFO11488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2LHet | 20474..20650 | 854..1025 | 96 | <- | Minus |
| 2LHet | 20723..21383 | 192..853 | 99 | <- | Minus |
| 2LHet | 21436..21569 | 58..191 | 100 | <- | Minus |
| 2LHet | 32924..32972 | 9..57 | 100 | | Minus |
