UFO11489.5prime Sequence
1109 bp (1014 high quality bases) assembled on 2012-05-17
> UFO11489.5prime
CAGTCGACATGGAGTCTTCCTGCAAATCCTGGCTGTTGTGCAGCATCCTG
GTGCTTGTGGCCTTTTCGTTGGTCAGTGCATCCGAAGATGAAGAGCGCTT
GGTGCGTGACCTCTTTCGAGGCTACAATAAACTCATACGACCCGTACAGA
ATATGACACAAAAAGTTGGAGTAAGATTTGGTTTGGCGTTCGTACAGCTA
ATCAATGTCAATGAGAAAAATCAAATTATGAAATCAAACGTTTGGTTACG
TTTGGTTTGGTACGACTACCAGCTGCAGTGGGATGAGGCCGACTACGGCG
GCATCGGGGTGTTGCGTCTGCCCCCCGACAAGGTTTGGAAGCCGGACATT
GTGCTCTTCAATAATGCCGATGGCAACTACGAGGTGCGCTACAAGTCCAA
CGTGCTGATTTATCCCACGGGAGAGGTCCTGTGGGTTCCTCCGGCCATTT
ACCAGAGCTCCTGCACCATCGATGTGACCTACTTCCCCTTCGATCAGCAG
ACCTGTATCATGAAGTTCGGATCGTGGACCTTCAATGGAGATCAGGTCTC
ATTGGCGCTCTATAATAATAAGAACTTTGTGGATCTGTCGGATTACTGGA
AGTCCGGCACCTGGGACATTATAGAGGTGCCCGCCTATCTGAACGTTTAC
GAGGGCGATAGCAACCACCCCACGGAGACTGACATCACATTCTACATCAT
CATCCGGCGAAAGACTCTCTTCTACACTGTGAATTTAATTCTGCCCACGG
TGCTGATTTCCTTCCTCTGCGTCTTGGTATTTTACCTGCCAGCCGAGGCC
GGCGAAAAGGTTACGCTCGGAATTAGCATTTTGCTGTCACTGGTTGTGTT
CCTGTTGCTGGTGTCGAAGATTCTGCCACCAACGTCGCTGGTGCTGCCAC
TGATCGCCAATATTTGCTGTTCACCTTTCATCATGACACGGTTTCATCTG
TGACCGTGATCATCATCAACTGGACTTCGGGGGCGCGCACCCACCGCATG
CCCATGTACATCCGCTCATCTTCTGCACTACTGCCCGCTTCTATTCATGA
GCGCCCCTCGAAGACCCGCCTGGCCTGATGATGAAATGCCGAATGAACCA
TGCGCAATC
UFO11489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nAChRbeta1-RA | 2460 | CG11348-RA | 240..1329 | 8..1083 | 4980 | 98.2 | Plus |
| nAChRbeta1-RB | 818 | CG11348-RB | 240..304 | 8..72 | 325 | 100 | Plus |
| nAChRalpha2-RB | 2319 | CG6844-RB | 967..1041 | 471..545 | 225 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4433615..4434061 | 365..811 | 2235 | 100 | Plus |
| 3L | 28110227 | 3L | 4433305..4433459 | 210..364 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 4432385..4432522 | 72..209 | 690 | 100 | Plus |
| 3L | 28110227 | 3L | 4434488..4434704 | 808..1017 | 680 | 95 | Plus |
| 3L | 28110227 | 3L | 4429651..4429715 | 8..72 | 325 | 100 | Plus |
| 3R | 32079331 | 3R | 24487529..24487605 | 471..547 | 235 | 87 | Plus |
| X | 23542271 | X | 8306670..8306749 | 520..441 | 190 | 82.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:52:14 has no hits.
UFO11489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:46:03 Download gff for
UFO11489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRbeta-64B-RA | 219..1316 | 8..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:27 Download gff for
UFO11489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRbeta-64B-RA | 240..1337 | 8..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:12 Download gff for
UFO11489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAChRbeta1-RA | 240..1337 | 8..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:12 Download gff for
UFO11489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4429651..4429715 | 8..72 | 100 | -> | Plus |
| 3L | 4432386..4432522 | 73..209 | 100 | -> | Plus |
| 3L | 4433305..4433459 | 210..364 | 100 | -> | Plus |
| 3L | 4433615..4434059 | 365..809 | 100 | -> | Plus |
| 3L | 4434490..4434785 | 810..1090 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:27 Download gff for
UFO11489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4429651..4429715 | 8..72 | 100 | -> | Plus |
| arm_3L | 4432386..4432522 | 73..209 | 100 | -> | Plus |
| arm_3L | 4433305..4433459 | 210..364 | 100 | -> | Plus |
| arm_3L | 4433615..4434059 | 365..809 | 100 | -> | Plus |
| arm_3L | 4434490..4434785 | 810..1090 | 92 | | Plus |
