UFO11490.5prime Sequence
1068 bp (937 high quality bases) assembled on 2012-05-17
> UFO11490.5prime
CAGTCGACATGAACGGACTGCCGCCGAGCAAGCACTACAACCTGACGCAC
TACCAGCAGCGCTACAACTGGGACTGCGGTCTGTCCTGCATCATTATGAT
CCTGTCGGCGCAGCAAAGGGAACAGCTTCTTGGGAACTTTGATGCCGTGT
GCGGCGAGGAGGGATTTGGCTCGAGCACCTGGACCATCGACCTGTGCTAT
CTGCTGATGCGCTACCAGGTGCGCCACGAGTACTTCACCCAAACGCTCGG
GATCGATCCCAACTACGCGCAGCACACGTACTACTCCAAGATCATCGACA
AGGACGAACGGCGCGTGACGCGCAAGTTCAAGGACGCCCGGGCCCATGGA
CTGCGCGTTGAACAGCGCACCGTGGACATGGAGGTCATTCTGCGGCATTT
GGCCCGCCACGGACCCGTCATCCTGCTGACCAACGCCTCGCTGCTCACGT
GCGAGGTGTGCAAGCGCAATGTCCTAGAGAAGTTCGGCTGTTTTCATATA
CCCTGCATTGCTCAAAATACACGCCTCCATGGACCCAAAAGGTATGCCGG
ACACTATGTGGTGCTCTGCGGATATGACATGGCCGCCCAGAAGCTCTTCT
ACCACAATCCCGAGGTCCACGATGGCCACATTTGTCGCTGCCTCATCGAG
TCCATGGACACGGCCCCGACGCGCCTACGGCACGGACGAGGACATCATTT
TCATATACGAGAAGACGAAACTAGGGAGGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACAATAAAAAACGCCCGGCCGGCAACCGAGCGTTCTGAACAATTCAG
GATGGAGTTCTGGAGTTCATTACTGGATCTATCAACAGGAGTCCAGCGAG
CTCGGATATCAAATTTCGCCCCGGCCTGCCACTCATCGCAGTACTGGTGG
TATTTCATTAAGCCATTTTGGCCGACATGAAGCCATCTAAAAACGGGCAT
GATAGAATCTGATCGCTA
UFO11490.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13760-RC | 1524 | CG13760-RC | 255..974 | 9..728 | 3540 | 99.6 | Plus |
| CG13760-RD | 1389 | CG13760-RD | 174..652 | 9..487 | 2395 | 100 | Plus |
| CG13760-RD | 1389 | CG13760-RD | 652..839 | 541..728 | 880 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2584667..2584939 | 487..215 | 1365 | 100 | Minus |
| X | 23542271 | X | 2584995..2585207 | 221..9 | 1065 | 100 | Minus |
| X | 23542271 | X | 2584463..2584603 | 627..487 | 705 | 100 | Minus |
| X | 23542271 | X | 2584295..2584395 | 728..628 | 395 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:52:18 has no hits.
UFO11490.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:46:04 Download gff for
UFO11490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13760-RC | 251..974 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:29 Download gff for
UFO11490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13760-RC | 251..974 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:14 Download gff for
UFO11490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13760-RC | 251..974 | 1..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:14 Download gff for
UFO11490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2584295..2584395 | 628..728 | 97 | <- | Minus |
| X | 2584463..2584602 | 488..627 | 100 | <- | Minus |
| X | 2584667..2584935 | 219..487 | 100 | <- | Minus |
| X | 2584998..2585211 | 1..218 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:29 Download gff for
UFO11490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2478328..2478428 | 628..728 | 97 | <- | Minus |
| arm_X | 2478496..2478635 | 488..627 | 100 | <- | Minus |
| arm_X | 2478700..2478968 | 219..487 | 100 | <- | Minus |
| arm_X | 2479031..2479244 | 1..218 | 98 | | Minus |
