UFO11491.5prime Sequence
1093 bp (969 high quality bases) assembled on 2012-05-17
> UFO11491.5prime
CAGTCGACATGGCGGACATTTACCAGGATGCCAGCACCACGCTGCGCTCC
GTGTTTCCCAACTCGCGGCTGGACTCGCTGGCCGGAGTGGATCGCCGGAT
GGAGAGTCAGCTGCCAGGACCACCGGATGCGGATGCAGTCACCACCGCCT
CGAGCATTGGCTATAATCCGCTCAACGACGACGACTGGTGGGCCAATGCC
ATCGAAGTGGACACCTTCGACTCACCGCTGGCCTTCGATGCTAGCGAAAA
TGGTCTGTGGAACGGACACTTTGTGCCGCCGCCACCTCGCCCGCCCTTCC
TGGATGAAAGCGTCGCCGCCGACGGCCTGACCACCTGTGATCTGTGCACG
TGGGCATGGCAGCGGAATGCCTACTCCCTGGATGGTTCCATAGAAACCGC
CGGCGAACTTGGATGGGCATTCACCCTAATCATAGTTTCAATCATATCGG
CTCTAATAGGTGCTATTGTAATGGTCATAGTTCTAAGATGTAGAAGAATT
AAATCAGCGAATGCCAATGGTGGCCGCCCGCAGCCTTGGTGGTGTCGCAA
TAACCGAAACGGTGGCCAAAATCGATCGCCCATCTCGATCAAGCACTCGG
CGGACAGCATCCGGCGGCCCACGAGCAACTCCGGCGTTTGGACCTGGCTG
GGCGGCAGTCGTCGCTCCTCCGCCGGTCCCGACCAGATCGGTCCGCCGTC
GACGTCGCCGGCGGAGAACCACTATACCCACATGGACGATGCCTACAGTC
CGGTGGGCGTGAGCGAGGCGCTCTACGCGGAACTGGATCGCGAGTCCGTG
CGATCCGCCAATCCCTCATATCAGAATACGGCCTACAGTCAGTGTGGCGA
GAAAATACAATTACCAGGGCCACGAGCAGGACATTCCCATGGTGTCTCCT
CGGCCACCCAGCAGTGCTTACTTTTCGGATTTTGTCGGTGACGCGATGCC
CGGCGAGCGAGTGCAGTAATCAAGGCGCCTTACGAGATTGTCGACTGACG
TTGATGTCCCAGCCGCTGCCCAACTTGGGATCATCATGCGGAGATGGGAG
TGGCGTGTTTGTGCTTCAGGAACACAATCTCGTCACTTGAAGC
UFO11491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42747-RC | 2857 | CG42747-RC | 735..1770 | 9..1043 | 4840 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6461666..6462050 | 9..393 | 1925 | 100 | Plus |
| 3L | 28110227 | 3L | 6484230..6484562 | 519..851 | 1665 | 100 | Plus |
| 3L | 28110227 | 3L | 6476541..6476645 | 392..496 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 6484685..6484871 | 853..1038 | 415 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:52:22 has no hits.
UFO11491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:46:05 Download gff for
UFO11491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42747-RC | 726..1788 | 3..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:30 Download gff for
UFO11491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42747-RC | 728..1790 | 3..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:15 Download gff for
UFO11491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42747-RC | 728..1790 | 3..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:15 Download gff for
UFO11491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6484231..6484562 | 520..852 | 99 | -> | Plus |
| 3L | 6484685..6484897 | 853..1059 | 91 | | Plus |
| 3L | 6461659..6462050 | 3..393 | 99 | -> | Plus |
| 3L | 6476543..6476645 | 394..496 | 100 | -> | Plus |
| 3L | 6480295..6480317 | 497..519 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:30 Download gff for
UFO11491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6477331..6477662 | 520..852 | 99 | -> | Plus |
| arm_3L | 6454759..6455150 | 3..393 | 99 | -> | Plus |
| arm_3L | 6469643..6469745 | 394..496 | 100 | -> | Plus |
| arm_3L | 6473395..6473417 | 497..519 | 100 | -> | Plus |
| arm_3L | 6477785..6477997 | 853..1059 | 91 | | Plus |
