UFO11494.5prime Sequence
1116 bp (984 high quality bases) assembled on 2012-05-17
> UFO11494.5prime
CAGTCGACATGCCCATCGACATGGATATACCAAAGGAAGCGGAGTCGAAC
GACAAGTTCATAGTAAAGTATCGCCAGCAGTATTACGATTTGTCCAGGTT
TATGCACAAGCATCCGGGAGGCATAAACACACTCAAAGGTCTCAACAGCG
GGGACATGACAGCTCGCTTCCTAAAGGCGCCGCCACATTCGGATGCGGCC
ATGTACTTGATGAGGGAGTACAAAATCGATCCAGAGGACTCTCGGAAACC
AAAGTCGAGCCAAAGGGAAACGTTGCATCACGATGAAGATGGGACTTTGC
GACAACGGCCCAGGGAAACGGAGGACAAGAACAATAACCAGGTGGACGAT
AGTATGGAGCACCTAGTGGACTGGTCTAAGGCAATGCTTCCGCAGATAGC
TAACATAACGGATTGCTACGATGAGTGGGTTCACAAGCCGGTGGACAGGC
CACTGCGTCTCTTTGACCCTTGGTACTTGGAGATGTGCACCAAGACGCCC
TGGTGGCTGGTGCCCCTGTTCTGGATACCAGTGATCGTGAAATGCGCCGT
GGAGGAGTTCACCACCGCCTGGCAGGATAGCAACCAGCTGGCTGTGTTCT
CCGGTTACTTTTTATTTGGCGTGCTCCTGTGGTCTTTCCTGGAGTACACA
CTGCACCGCTGGGTGTTCCACGTGAAGCTGAGCAACAAGAGCGGAAGTTG
GCTATGCACCTTCCACTTCATGATCCATGGCCTGCACCACAAGGTGCCCT
TCGATCCGATGCGACTGGTGTTTCCGCCCCTTCCCGGCGCAGTGCTCGCC
GCGGTCATCTACACCCCGCTCAGCTTTGTCCGTGTCCCATCCGCGAGTGA
TCTTGTCTGGAGCTCTGGCCGGCTATCTGTGCTACGATATGATGCACTAC
TACCTTGCACTATGGGAACTCTTCGCTATTGGGCCTTTGTACACATGAAG
CGCTATCATCACCACCACCAACTTCTCGCACCAAACTCTTCGGTTACGGC
ATCAGCAGTTCCCTTGGTGGGATGTCGTCTTCAAACGAAGAATTCCATCT
CCGCACAGCTGAGAAAACCAACCTGCGCCTGATCCGCAAGCTTTCTAGAA
CCATCGGTTTGGCGCC
UFO11494.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fa2h-RB | 1399 | CG30502-RB | 120..1178 | 9..1078 | 5000 | 98.6 | Plus |
| CG11125-RC | 2177 | CG11125-RC | 1600..1950 | 359..9 | 1755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7446430..7446892 | 1055..585 | 1900 | 97 | Minus |
| 2R | 25286936 | 2R | 7449418..7449768 | 359..9 | 1755 | 100 | Minus |
| 2R | 25286936 | 2R | 7446954..7447183 | 587..358 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:51:51 has no hits.
UFO11494.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:59 Download gff for
UFO11494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30502-RB | 118..1178 | 9..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:16 Download gff for
UFO11494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fa2h-RB | 120..1180 | 9..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:03 Download gff for
UFO11494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fa2h-RB | 120..1180 | 9..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:03 Download gff for
UFO11494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7446408..7446889 | 588..1081 | 96 | <- | Minus |
| 2R | 7446954..7447181 | 360..587 | 100 | <- | Minus |
| 2R | 7449418..7449768 | 9..359 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:16 Download gff for
UFO11494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3333913..3334394 | 588..1081 | 96 | <- | Minus |
| arm_2R | 3334459..3334686 | 360..587 | 100 | <- | Minus |
| arm_2R | 3336923..3337273 | 9..359 | 100 | | Minus |
