UFO11501.5prime Sequence
1127 bp (1011 high quality bases) assembled on 2012-05-31
> UFO11501.5prime
CAGTCGACATGAAAGCTATCATCGTTTTTATTCTGTTCATTTCAAGTGTG
CATGCTATGAGCAAATGCAACCAAGCAATTTATCTAAATCTTGATCCTCA
CTGCGGAATACTTCCCGATTGTAACTTAGATGGTCCAAATCCAAGTTACC
TCAAAAGGGTGTCGTGTGAACGCAAAGAAAACGGAAAACCAGGATTCATC
GAACTAATTCCCGGAAAATGTCTCCATGGTAAACCGCGTTGCTCGTTAAA
AGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA
AGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACC
TTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAA
GTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGG
GATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAG
GCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAA
CTGCCGGAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGT
TTGCTCATGGAAAACGGTGTAACAAGGGTGACACTATCCCATATCACCAG
CTCCCCGTCTTTCATTGCCATACGAAATCCGGATGAGCATTCATCAGGCG
GGCAGGATGGTGAATAAGGCCGGATAAACTGTGCTATTTTTCTTACGGGT
CTTTAAAAGGCCGTATATCAGCTGACGGTCTGGTTTAGGTACATGGACCA
CTGACTGAAATGCTCAAATGTCTACGATGCATGGGATATATCAACGGGGT
GTATTCAGGGATTTTCCCCAACTTAGC
UFO11501.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp63F-RB | 316 | CG10852-RB | 10..252 | 9..251 | 1215 | 100 | Plus |
| Acp63F-RA | 401 | CG10852-RA | 10..252 | 9..251 | 1215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3816100..3816256 | 193..37 | 785 | 100 | Minus |
| 3L | 28110227 | 3L | 3815988..3816048 | 251..191 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:01:39 has no hits.
UFO11501.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:27 Download gff for
UFO11501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp63F-RA | 10..252 | 9..251 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:25 Download gff for
UFO11501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp63F-RA | 10..252 | 9..251 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:54 Download gff for
UFO11501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp63F-RA | 10..252 | 9..251 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:54 Download gff for
UFO11501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3815988..3816046 | 193..251 | 100 | <- | Minus |
| 3L | 3816101..3816256 | 37..192 | 100 | <- | Minus |
| 3L | 3816318..3816345 | 9..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:25 Download gff for
UFO11501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3815988..3816046 | 193..251 | 100 | <- | Minus |
| arm_3L | 3816101..3816256 | 37..192 | 100 | <- | Minus |
| arm_3L | 3816318..3816345 | 9..36 | 100 | | Minus |
