UFO11503.5prime Sequence
1104 bp (928 high quality bases) assembled on 2012-05-31
> UFO11503.5prime
CAGTCGACATGGCCAAGACCAGCTTATGTCTGGTACCAATTCTCTGTCAA
TTTCTGGGACTACATGCCGCTTTGCTAGACTCTTTACTTAATCAGAGTAC
CATATACTACCTTAAACCATCAGCGGATGTTTCCCTGGAGAATGTGGAAC
AGTTGTCGTCTGTGGAATCTGTTAAGTTGATTGTCCACGGTTACCTGGGA
TCTTGCACCCATGGCTCTATAATGCCTCTGAGAAATGCCTATACTGCTCA
GGGATATGAGAATGTTTTGGTGGCTGACTGGGGTCCTGTGGCCAATCTAG
ATTATCCCAGTTCGCGATTGGCTGTGAAGAACGTGGCCCAGATTCTAGCC
AAATTATTGGAGGAATTCCTACAGCGCCATGGGATCTCCTTAGAAGGAGT
CCATGTCATAGGACACAGCTTGGGAGCTCATATCGCAGGACGAATTGGAC
GTTATTTCAACGGATCTTTGGGCAGAGTTACGGGTCTGGATCCGGCTCTT
CCCCTATTTTCAAGCCGATCGGATGATAGCTTGCACTCGAATGCCGCTCA
ATTCGTGGATGTGATTCACACGGACTATCCCTTGTTTGGCGACATTCGAC
CTCGAGGAACTGTGGACTTCTATCCCGAATTTTGGACTGGCTCCACAGCC
AGGATGCGAAAATGTGGATGTTGTTGCTGCCAGTAAGCTACTCCACGAGG
CTTATAGTTGCAGTCACAATCGAGCAGTCATGTTCTACGCTGAATCATTT
GAAATGCCTGAGAATTTTCCAGCGGTTTCTTGCATTTTAACGGCCATTAA
AGTCGCGTGTAGAGGACTGCCTAAGGAAAATCAAAACTAATACAGAAAAC
GCAATGATATCAACTGTCTTTATGGGCGAACATGTAACCCGCAGCGCCAC
CTTGTACTATTAATTTGGAAACTAATGGAGCGCCACCCTTACGGCCAGGG
CAAGGAACTCACCATTTCGCAAGCTTTTCTAGAACATTCGTTGGGCGCGC
GGGCCCAGGTAGTGGTCATATCCATAATCTAATCTATATCCTATCAAACT
AGCCTAGGAAATTCTGTCTAGACTATGCTTGGGATTCTCACAATATAAAG
GCCG
UFO11503.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10357-RC | 1111 | CG10357-RC | 10..975 | 6..968 | 4465 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3615697..3616162 | 237..703 | 2285 | 99.8 | Plus |
| 3L | 28110227 | 3L | 3615391..3615622 | 6..237 | 1160 | 100 | Plus |
| 3L | 28110227 | 3L | 3616222..3616420 | 704..894 | 555 | 93.5 | Plus |
| 3L | 28110227 | 3L | 3616475..3616532 | 893..952 | 200 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:01:42 has no hits.
UFO11503.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:28 Download gff for
UFO11503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10357-RC | 5..975 | 1..968 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:27 Download gff for
UFO11503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10357-RC | 5..975 | 1..968 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:56 Download gff for
UFO11503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10357-RC | 5..975 | 1..968 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:56 Download gff for
UFO11503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3615386..3615622 | 1..237 | 98 | -> | Plus |
| 3L | 3615698..3616162 | 238..703 | 99 | -> | Plus |
| 3L | 3616222..3616420 | 704..894 | 93 | -> | Plus |
| 3L | 3616477..3616546 | 895..968 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:27 Download gff for
UFO11503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3615386..3615622 | 1..237 | 98 | -> | Plus |
| arm_3L | 3615698..3616162 | 238..703 | 99 | -> | Plus |
| arm_3L | 3616222..3616420 | 704..894 | 93 | -> | Plus |
| arm_3L | 3616477..3616546 | 895..968 | 94 | | Plus |
