UFO11504.5prime Sequence
789 bp (788 high quality bases) assembled on 2012-05-31
> UFO11504.5prime
CAGTCGACATGAGGAAAATGCCTCTTGGACTACCCATTTGGACACCATTG
TTCATCCTTTTCTTGCTTTTCCTGGCCGGCGTTTGGGGTGTGAATCGCAA
TGGTCTGCTGGACTTTTATCATGAACAGGTTCATGGAACTCCTTTAACTA
AGAAGGAAGTCGAGTGTCCAGAGGATGGAATTATGAACATCAAGCAAAGC
CGTTACGATAGATCACTGAATCCTTTCAAGGCATTTCTGAATTGGCCGGA
TAGACACAAAGTACATAAGGATGATAAATATAAGCCACTTGAAGGTGATT
TGTATGGCCACGAAGAGCCTCTATTTGATTTTGAATTGACAAAGTACCAA
GCCGGTGCACCGCTAGTTGATAACAGAGCTGATCACTTTTTAGCCCAAGA
TTATAAATCAGACTTTGATCGCAAGCTGGGTGTAATGGATCATGATTATC
CCGATCATTTTAAGCTTAATGCAGATCACTTTAATCTTGATGCAGATCAG
TTTAATACGGTGTCAGACCGCTTGAATCAGAATGAAAATCATTTCAGTCT
GGATGCAGATCAATTAAATCGTGATGCCAATCAATTCAACGTGAATACAA
ATAACTTTAATCAGCATCGTGACGTGGATGTGCTTGACAACTTTCAAGCT
AACAAGCCCGATTTGGTAAATAGTCCCATGATGGACTATAAACGTGAATT
TCGCCAGCGATGAAGCTAAACCCTTATGTTGAGAGCCTTCACCACCGCTA
TGAATCCTTTACCACTTGCTTATAAGGACGCAAGCTTTC
UFO11504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32718-RB | 962 | CG32718-RB | 70..838 | 8..779 | 3680 | 98.7 | Plus |
| CG32718-RD | 965 | CG32718-RD | 70..841 | 8..779 | 3640 | 98.3 | Plus |
| CG32718-RC | 977 | CG32718-RC | 70..853 | 8..779 | 3520 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7778635..7779060 | 223..648 | 2130 | 100 | Plus |
| X | 23542271 | X | 7778436..7778571 | 87..222 | 680 | 100 | Plus |
| X | 23542271 | X | 7778274..7778355 | 8..89 | 410 | 100 | Plus |
| X | 23542271 | X | 7779117..7779246 | 647..779 | 410 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:01:46 has no hits.
UFO11504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:29 Download gff for
UFO11504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32718-RB | 63..843 | 1..787 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:28 Download gff for
UFO11504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32718-RB | 63..843 | 1..787 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:58 Download gff for
UFO11504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32718-RB | 63..843 | 1..787 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:58 Download gff for
UFO11504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7778267..7778353 | 1..87 | 96 | -> | Plus |
| X | 7778437..7778571 | 88..222 | 100 | -> | Plus |
| X | 7778635..7779060 | 223..648 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:28 Download gff for
UFO11504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7672300..7672386 | 1..87 | 96 | -> | Plus |
| arm_X | 7672470..7672604 | 88..222 | 100 | -> | Plus |
| arm_X | 7672668..7673093 | 223..648 | 100 | -> | Plus |
