UFO11507.5prime Sequence
1084 bp (879 high quality bases) assembled on 2012-05-31
> UFO11507.5prime
CAGTCGACATGGAAGCAAATTTGGAGAACGGTCAGAAAACGATCGCCTCG
ACAAGCAAATCGCATTCGCAGCGTCAAACAACATCTCGACGGCGGCAAAA
CGACAGCGATGTGGCCGGAGGCGTGGGAATCACCGGTGGGGGAGTCGTCA
TTTTGCCGCAGCACGTGCTTAACGAACTCTACCACAACTACTCCATCAAA
CAACGCCGCAGTGGATTGAAGTGGTTTGTCTTTGCGGCCGCGTTGTTTAA
CATATGGACCATCGGAATTCCCTGGGATCAGTCGGCCCCTACGAGAGTGA
TCAACTGTTGTATGCTGTTAGCTTACTTGGCATTGACAGCGCTCCTTCAT
ATTGGACGCCGTTCTGATAAACCGGCACTGAGGCGCTTCCACCAAATACT
CCTGATTATTGTGCCACGGGCACTGTGGCTATTAAGCATTCTTCATTTTA
CCGTTTATGTTATTCTGCAGCCTAGTTTTTCTCCAAGGGACCTACTTGGC
TGGGCCATCCTTCTAAATTTCTTGGTCTATGTGACGCTGCCATTACAGCT
GATTTTTCTTGGTCTGTCGATTGGATGTATCACATATTTCATTTGCCTCA
GTCTCCCTGTTGGTTATTCTCACTGGGACTCGCTGCTCTCGAACCAATTA
GCGGCTAATGCAGTTTTGATAGCCACGGCAGCGCTGATAGGCCTTTTGTA
CTACTTTATGGGTGAGGCCAAGCAGAAACGAGCCTTTCTCGAGGCCAAAA
AGAGCCTTGAAGTTAAATGGTCATAGAGGAACAGTCGGCCGACAGGAGCG
TCTGCTATTGCTGTGCTGCCAAACATGTGCTATTAAGATGCGGGAGATTG
GGATCATCCAGTTCCGAGCTTTAAAAATTTACATGATCGGCCCAGATGTA
GAATATCACATTGCGCATAAGATCTGGCGATGCTACTACTGATTACGGTG
CCCTGATGAGCGTCAGATCACGCGTCTGGTGTGACATGGATCCCATGGCA
ACTTCTAGACATCGTGGCGCGGCCAGGTAGTGTCAAACTTAACTATCTAT
CTATCAAATAGCTAGAATCTGCTGACATGCTGAT
UFO11507.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ac3-RC | 2126 | CG1506-RC | 409..1403 | 5..973 | 4315 | 97.2 | Plus |
| Ac3-RA | 5055 | CG1506-RA | 409..1307 | 5..891 | 4200 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21634724..21635031 | 486..792 | 1490 | 99.7 | Plus |
| 2L | 23513712 | 2L | 21633623..21633915 | 5..297 | 1450 | 99.7 | Plus |
| 2L | 23513712 | 2L | 21634418..21634610 | 296..488 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:01:54 has no hits.
UFO11507.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:30 Download gff for
UFO11507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ac3-RC | 115..1017 | 1..891 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:32 Download gff for
UFO11507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ac3-RC | 405..1307 | 1..891 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:01 Download gff for
UFO11507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ac3-RC | 405..1307 | 1..891 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:01 Download gff for
UFO11507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21633619..21633915 | 1..297 | 98 | -> | Plus |
| 2L | 21634420..21634609 | 298..487 | 100 | -> | Plus |
| 2L | 21634726..21635035 | 488..795 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:32 Download gff for
UFO11507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21633619..21633915 | 1..297 | 98 | -> | Plus |
| arm_2L | 21634420..21634609 | 298..487 | 100 | -> | Plus |
| arm_2L | 21634726..21635035 | 488..795 | 99 | -> | Plus |
