UFO11508.5prime Sequence
1113 bp (938 high quality bases) assembled on 2012-05-31
> UFO11508.5prime
CAGTCGACATGGGCGACCTGCCGGGCTCGGGCTCCACCGCTCAACCACGG
GATGCTGCTGTCACCGGTACCGGTGGTAATTCCACGGCTGGTGGCGGCTC
CTCCGTTGGATCTACGGCAGTGGACCGACCTCCGTCGCCCGCCCGCCTCT
CTCACACGTCCGAGAAACATCCGAAGGTCACGCTCACTGAACTAAATATG
CTACGGCGCCATCGGGAGCTCTGCGATGTGGTGCTCAACGTGGGCGGACG
GAAGATCTTTGCCCACCGGGTAATCCTGTCCGCCTGCAGCTCCTACTTCT
GTGCCATGTTCACTGGCGAATTGGAGGAATCGCGCCAGACTGAGGTCACC
ATACGCGACATCGATGAGAATGCCATGGAGCTGCTCATCGACTTTTGTTA
CACCGCCCACATAATCGTCGAGGAGTCGAATGTCCAGACCCTCCTTCCCG
CCGCCTGCCTGCTTCAACTGGTTGAGATTCAGGACATCTGCTGCGAGTTC
CTCAAACGGCAATTGGATCCCACCAACTGCCTGGGCATACGCGCCTTTGC
CGACACACACTCCTGCCGGGAACTTCTACGGATCGCCGACAAATTCACGC
AGCACAACTTCCAGGAGGTGATGGAGAGCGAGGAGTTTCTGCTGCTCCCC
GTCGGCCAGCTGGTGGACATCATTTGCAGCGACGAGCTAAACGTGCGCTC
CGAGGAGCAGTCTTCAACGCGGTCATGTCCTGGCTCAAGTACAATGTCGC
CGAGCGGCGACAACATCTGGCACAGGTGCTCCAACACGTCCGTCTGCCTC
TGCTGTCGCAAAGTTCCTGGTTGGCACGGTGGGCTCTGATCTCCTGGTGC
GCACGACGAGGCCTGCCGGGATTTGGTGGATGAGGCTAAAAACTATCTGT
GCTTCCGCAGAGCGACCGCTGATGCAGGGTCCACGCACCAAACCGCGAAA
GCCAACTCGACGAGGCGAAGTCCTGTTCGCCGTGGGCGGTTGGTGTTCCG
GGCGATGCTATGCTTCCGTGGAACGTTTCGATCCTCGACCAACGAACTTA
ATTGGTCGCTCCCATGAACCAACCACCCCTGCGAATGGCCGGCCGGGTTA
ATTGATCTACTTA
UFO11508.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbo-RB | 3186 | CG6224-RB | 267..1379 | 9..1112 | 5015 | 97.4 | Plus |
| dbo-RA | 3650 | CG6224-RA | 267..1379 | 9..1112 | 5015 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15828318..15829040 | 57..778 | 3565 | 99.9 | Plus |
| 3L | 28110227 | 3L | 15829183..15829450 | 773..1036 | 985 | 96.3 | Plus |
| 3L | 28110227 | 3L | 15828003..15828051 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:01:57 has no hits.
UFO11508.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:30 Download gff for
UFO11508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbo-RA | 271..1355 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:34 Download gff for
UFO11508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbo-RA | 263..1347 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:03 Download gff for
UFO11508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbo-RA | 263..1347 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:03 Download gff for
UFO11508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15827999..15828051 | 1..57 | 92 | -> | Plus |
| 3L | 15828319..15829037 | 58..775 | 99 | -> | Plus |
| 3L | 15829186..15829498 | 776..1083 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:34 Download gff for
UFO11508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15821099..15821151 | 1..57 | 92 | -> | Plus |
| arm_3L | 15821419..15822137 | 58..775 | 99 | -> | Plus |
| arm_3L | 15822286..15822598 | 776..1083 | 93 | | Plus |
