UFO11509.5prime Sequence
1132 bp (1014 high quality bases) assembled on 2012-05-31
> UFO11509.5prime
CAGTCGACATGATAACCCTATTAAAACCAATTCATAAATGGCTCTGCTTC
TGCCTAATTGCAATAATCGTAATTCTCGGCATCAAAACCCAAAATGCAAA
TACTAAGCCCAGAGTTTCAGAAGTCACAGGATCGGATGACACAAATTCCG
ACATTCCTCCTGCTGAAGAAGATCGAAATGTACAGGATGTAGTCCGGCCC
GCATATTTTGTGGAGTCCGCCAAGTGCAAGATCCCGTATGTTGATCCCTT
CGCCTCAGATGCAATGGCCATTTTCCACCCCGAGCATTTTGAGACCTGCT
CAAACGAAACCGCCCTGGTTACTCCGATCTATGACATCAGTCGGCAGCGA
TATGTACTCTTCATCAATGAGTCGTTAGCCTCCATTATTCTCAACTCCAA
TGGGGGGGAGTACAATTGCTATTATCAGGAGATAACGCGGGACCGTAAGC
ACGACAGTTATGATAAGATGGAGCGAAAATACTTCTCTCAGAACTACGAG
GTGCCGCTCCATGTTGAGGGCCTGATCTTGACCTGCCATCGTCTTGGCAA
CGAGTCGGATATTTTGCAGAGCGATGCGTATAACCTCATTCAATACAGGC
CACCACCCAAAGGACTCTCGCTGAAACCGTCCAAGAGGAAGCCAAGTGTC
CTTATGTTCGGCATAGACAGCCTTTCGCGGATCAATTTGCGTAGAACTAT
GCCGAAGGTCTATAAGTTCCTAACGAGGGACGGGTGGTTCGAGCAGCAAG
GATACAATAAGATAGGCGACAACACCTTCCCCAATCTGTTGGCCATTTTG
ACAGGCTACAATCCAGAAGTCGGCCATTAAGAAGGTGTGCAACTGGCACG
AGGATGGGTGCCTAGATAGGACCCCTTTTTATATGGCACTACTTCCGGAA
TGCCAGCTATCTCACAGCCTATGCTGAGGATGAGGCAGCATTAATACATT
CAACTATGGAAACCGGGTTTCCTGGAGCAGCCCACCGACTTCTACTTAAG
GCCTTGCAAGGCATTGATCGGCTGACACTTGAAATGCATGACTGCTCGAT
GAAGTACTGTATCGCCGGCGGAACACGAGCAGTAATGCCTACAACTTGCA
GAATTGGCCACGGTTTCGTGGATGACGACAAT
UFO11509.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9988-RA | 2274 | CG9988-RA | 12..1145 | 8..1125 | 5115 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28636422..28636881 | 8..467 | 2300 | 100 | Plus |
| 3R | 32079331 | 3R | 28636941..28637235 | 467..761 | 1475 | 100 | Plus |
| 3R | 32079331 | 3R | 28637289..28637532 | 760..1003 | 1030 | 98.4 | Plus |
| 3R | 32079331 | 3R | 28637578..28637632 | 1039..1092 | 195 | 94.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:02:02 has no hits.
UFO11509.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:31 Download gff for
UFO11509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9988-RA | 7..1153 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:36 Download gff for
UFO11509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9988-RA | 8..1154 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:05 Download gff for
UFO11509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9988-RA | 8..1154 | 1..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:05 Download gff for
UFO11509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28636418..28636880 | 1..466 | 99 | -> | Plus |
| 3R | 28636941..28637235 | 467..761 | 100 | -> | Plus |
| 3R | 28637291..28637679 | 762..1132 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:36 Download gff for
UFO11509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24462140..24462602 | 1..466 | 99 | -> | Plus |
| arm_3R | 24463013..24463401 | 762..1132 | 92 | | Plus |
| arm_3R | 24462663..24462957 | 467..761 | 100 | -> | Plus |
