UFO11511.5prime Sequence
1086 bp (981 high quality bases) assembled on 2012-05-31
> UFO11511.5prime
CAGTCGACATGAGCTTCCCCTTTCGTTTGGTGAACTTTGTGCTGCAGTTG
CTAACGGCGGTCCTGGAGGTTGTGGCCCTGGGTCTGCTCATCCGAATCCT
ATCCACGCACTGTGTCCTGGGCGAGGAGTACGGCATATCGGTGTGGATGT
ACACGTTCATCCTACCCGCCATCGCCTGTCAGAGCGTGGTTCTCGTCATA
TTCCGGCTATGCTGCACCACCGTGGGCCTCGATCCAATTGCGATGACGTT
TAATTTCGCCAGCGGCTTCCTGTGCCTAGGAAGCGCACTTGCCCTCCTGG
TGTCCATGGTCGATCATTGCGGCAACGAGTTCGCATACATATTCTATATG
TCGAGCGCCTTTGGCGTAATCGCTGGGGTCCTGCATTTGCTGAATGCCTG
CGTGTGCAACGTTTACATTCCCAGCGGCGAATGGTCTTACATGAAACCTT
CGAAGAGGGCAAGGAAAAAGGAGTTGAAAAATCCTAGACGCAGAAGCGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCA
TCACAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATATATTTGCCCATGGTGAAAACGGGGCGAAGAGTTTCCATA
TTGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGATTGCTGAAACG
AAACATATCCTCAATAACCCTTAGGGAAATAGCCAGTTCACGTAAACGCC
ACATCTTGCAATATATGTGTAGAACTGCGAATCGTCTGGTACTCACTCCG
AGCCGATGAAAACGTTTCAGTGCTCATGAAACGTGG
UFO11511.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12426-RB | 649 | CG12426-RB | 48..536 | 9..497 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27871741..27871936 | 435..240 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 27872049..27872230 | 240..59 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 27871614..27871678 | 497..433 | 325 | 100 | Minus |
| 3R | 32079331 | 3R | 27872291..27872343 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:01:30 has no hits.
UFO11511.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:25 Download gff for
UFO11511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12426-RB | 48..536 | 9..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:21 Download gff for
UFO11511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12426-RB | 48..536 | 9..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:51 Download gff for
UFO11511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12426-RB | 48..536 | 9..497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:51 Download gff for
UFO11511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27871614..27871677 | 434..497 | 100 | <- | Minus |
| 3R | 27871743..27871936 | 240..433 | 100 | <- | Minus |
| 3R | 27872050..27872229 | 60..239 | 100 | <- | Minus |
| 3R | 27872293..27872343 | 9..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:21 Download gff for
UFO11511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23697336..23697399 | 434..497 | 100 | <- | Minus |
| arm_3R | 23697465..23697658 | 240..433 | 100 | <- | Minus |
| arm_3R | 23697772..23697951 | 60..239 | 100 | <- | Minus |
| arm_3R | 23698015..23698065 | 9..59 | 100 | | Minus |
