UFO11512.5prime Sequence
1061 bp (945 high quality bases) assembled on 2012-05-31
> UFO11512.5prime
CAGTCGACATGAGCAACAAGAGCACTCCGGTGCGGCAGCGCATCCAGCAG
TTCCAGACGCGAGGAGTCCACAAATCCACGCCGGCATCCGAGATGCGCAA
GAAGGTGCTGATGACGCGGGCGGAGGATCGGGAGCACCGGGATCGTCCCG
AACAGCTGCTGAACACTGCATTCAGCGGGAGCACGCCACAGCCGAAGCCC
AAGCCCACGGCCCTGAATGCCTGCTACACACCCTCGTCGCTGTACAGGAA
TGCGAACTCTACTCCTGGAAGAGCAAAGACGCCCGGCACCGGGAAATCCA
GCTGCAGCAGGACAAAGGAGCGGGACTCTCTGATGGAGTCCTGCCTCAGC
GTGTCCGAGGAGAGCAACATGATTGTGGCGGTGCGAGTGCGGCCACTGAA
TGCCCTGGAATGCACACGTGGTCAGGTCACCAATGTGGTCCAGGTGCACG
GAAACAGCAACGAGCTGACTGTCCAAGCGGGCAGCAGTGCTGATGCCTCC
GCCGGCGTGACGCACTTCTTCAGCTACGACCAGGTCTACTACTCGTGCGA
TCCCGAACGAAAGAACTTCGCCTGCCAGGCCAAAGTCTTTGAGGGCACAG
CGCGTCCCTTGATCGACACTGCCTTCGAGGGCTACAATGCCTGCTTGTTT
GCCTACGGCCAGACGGGCTCGGGCAAATCGTACAGCATGATGGGCATTGA
AGCATTGGATGACGCCGCTCTGGATGGCGGACCGCCGCACGATGAGGCGG
GCATCATTCCACGCTTCTGCCACGAGCTATTCCGCCGCATAGAGGCTGTG
AAAGTCAGCAGCAGCTGCAGTGGAGGTGGAGGTCAGCTACTTTGAGATCT
ACAACGAGAAGATACACGATCTGCTGAGTGTCAGCATGCGGCAGCTGCCA
CCGGAATCCACGCCCATCCAGCAGCAACAACAGCAGCAGCGTCCGGCTCT
TAAGGTCAGAAGCATCCATCTTCGGCCCTACGTATTGACTGATGCCCTCG
GTGACTCCGTACTCGACTCCGCAACTGCTTGCGGGGCACTCCAGGGGGCC
ACTTGCTCACC
UFO11512.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neb-RA | 3592 | CG10718-RA | 98..1165 | 6..1053 | 4765 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20075854..20076812 | 6..959 | 4565 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-28 03:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6806 | 854..940 | 120 | 62.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 124..177 | 888..941 | 117 | 68.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9154..9207 | 888..941 | 117 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2418 | 847..940 | 116 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6785 | 889..940 | 116 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1608 | 882..967 | 115 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6743 | 918..940 | 115 | 100 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6854 | 882..940 | 112 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6844 | 919..968 | 110 | 72 | Plus |
UFO11512.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:26 Download gff for
UFO11512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neb-RA | 95..1056 | 1..959 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:24 Download gff for
UFO11512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neb-RA | 95..1056 | 1..959 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:53 Download gff for
UFO11512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neb-RA | 95..1056 | 1..959 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:53 Download gff for
UFO11512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20075851..20076812 | 1..959 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:24 Download gff for
UFO11512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20075851..20076812 | 1..959 | 99 | == | Plus |
