UFO11513.5prime Sequence
1099 bp (951 high quality bases) assembled on 2012-05-31
> UFO11513.5prime
CAGTCGACATGGCCATGGCAGGACCCCACCGCCTGCCACGCCCACATACA
CGCCGCCGCTTCCGCCTACAGGCGGAGTTTAACGTCCGGCAGTTGGCCAT
CACGATAATAGCCACTGCCGCGGTTACCATGCTGATGACAGCCACGCCCA
CCCTCGCCGAAATCCCCTCAAAGGGAAAACACACGCGACTGGACACCCAG
CAGACGGCACAGGAAGATTCCGACTTTCCGCGATTCGCGGAACCCATTGC
CAATGTCACCGTTTCCGTGGGTCGAGATGCTCTAATGGCATGTGTGGTGG
AGAACCTTAAGGGATACAAGGTGGCCTGGGTGCGGGTGGACACGCAGACG
ATCCTGTCCATTCACCACAACGTGATCTCGCAGAACAGCCGCATCAGCCT
GACCTACAATGACCATCGATCGTGGTACTTACACATCAAGGAGGTTGAGG
AGACGGATCGCGGTTGGTACATGTGCCAAGTGAACACGGATCCCATGCGC
TCCAGGAAGGGCTATTTGCAGGTGGTGGTTCCACCGATTATTGTCGAGGG
CCTGACCAGCAACGATATGGTGGTGCGCGAGGGTCAGAACATCTCGCTGG
TTTGCAAGGCACGTGGCTATCCGGAGCCCTACGTCATGTGGCGACGCGAG
GACGGCGAGGAGATGCTAATTGGCGGGGAGCACGTTAACGTGGTCGACGG
TGAGCTGCTGCACATCACCAAAGTGAGTCGCCTGCACATGGCCGCGTACC
TGTGCGTCGCCTCCAACGGAGTCCCACCTTCGATTAGCAAACGGGTCCAC
CTTCGTGTGCAATTTCCGCCGATGCTATCCATACCCAATCAGCTGGAGGG
AGCCTATCTGGGCCAAGATGTTATACTCGAGTGCCACACGGACGCCTATC
CAGCATCGATTAACTATTGGACCACGGAACGCGGAGATATGATCATATCG
GACACCTCGCGAGCGGCGATAATACGAGACCACATCGACCGTCAGCGGTA
ACCAAGTACATGAAGGTGAAATCCGTGCGGTGACCAACGATTTCGGCCCA
TATGCTGGCGTGACAGATCCTGCGACCGAATGAAATATAAACCTGACGA
UFO11513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31814-RB | 2709 | CG31814-RB | 473..1526 | 8..1053 | 5005 | 98.8 | Plus |
| CG31814-RA | 3841 | CG31814-RA | 328..1381 | 8..1053 | 5005 | 98.8 | Plus |
| CG11320-RB | 1327 | CG11320-RB | 370..550 | 317..497 | 245 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13690084..13690291 | 422..215 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 13713972..13714139 | 175..8 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 13689586..13689746 | 688..528 | 790 | 99.4 | Minus |
| 2L | 23513712 | 2L | 13687521..13687658 | 951..814 | 675 | 99.3 | Minus |
| 2L | 23513712 | 2L | 13689356..13689485 | 813..684 | 650 | 100 | Minus |
| 2L | 23513712 | 2L | 13689947..13690014 | 489..422 | 340 | 100 | Minus |
| 2L | 23513712 | 2L | 13690490..13690532 | 216..174 | 215 | 100 | Minus |
| 2L | 23513712 | 2L | 13689845..13689885 | 528..488 | 205 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 758..833 | 1000..1080 | 123 | 65.4 | Plus |
UFO11513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:33 Download gff for
UFO11513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31814-RA | 316..1380 | 4..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:40 Download gff for
UFO11513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31814-RA | 326..1390 | 4..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:09 Download gff for
UFO11513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31814-RA | 326..1390 | 4..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:09 Download gff for
UFO11513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13687521..13687658 | 814..951 | 99 | <- | Minus |
| 2L | 13689356..13689484 | 685..813 | 100 | <- | Minus |
| 2L | 13689590..13689745 | 529..684 | 100 | <- | Minus |
| 2L | 13689845..13689884 | 489..528 | 100 | <- | Minus |
| 2L | 13689948..13690013 | 423..488 | 100 | <- | Minus |
| 2L | 13690084..13690289 | 217..422 | 100 | <- | Minus |
| 2L | 13690490..13690531 | 175..216 | 100 | <- | Minus |
| 2L | 13713973..13714141 | 4..174 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:40 Download gff for
UFO11513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13689356..13689484 | 685..813 | 100 | <- | Minus |
| arm_2L | 13687521..13687658 | 814..951 | 99 | <- | Minus |
| arm_2L | 13689948..13690013 | 423..488 | 100 | <- | Minus |
| arm_2L | 13690084..13690289 | 217..422 | 100 | <- | Minus |
| arm_2L | 13690490..13690531 | 175..216 | 100 | <- | Minus |
| arm_2L | 13713973..13714141 | 4..174 | 98 | | Minus |
| arm_2L | 13689590..13689745 | 529..684 | 100 | <- | Minus |
| arm_2L | 13689845..13689884 | 489..528 | 100 | <- | Minus |
