UFO11515.5prime Sequence
1077 bp (955 high quality bases) assembled on 2012-05-31
> UFO11515.5prime
CAGTCGACATGAGTGGAGAGGAGGAGTACTTCCAGGAGGAGGAAGAAGAG
GAGCAGGAGCAGGATATTTACGACGATGGCACGGAATACACCGAACCGGG
TGCCCAGAAGGTAGACAAGCCGTCAAAGGACGAGAAGAACGTGGCCAAGT
GGCTGAAGAAGAACGTTAAGACGAAGAAGACCAAATTCCTGAGCCACATC
GTCGAATACTTCACCTCCAGCAAGGCCATCGATGCTCTGCTAAAGTCCAA
ATTCACCGAAGGCAGCAATCCGCTTTTCACCACCCGGGAGCAGGTAATCG
AGTTTCTAGACGTGATGCTGGAGCACAAGTTCTTCCATCGCGCCAAGAAG
GTGCCCGTCACTCTGGAGGAGATCAGAGGAAAGTCTGGAGGCGACAAGAA
GGCGGACAAGGAGAAGACCCAAGATAAGGAAAAGGACAAGGCAAAGGATG
AGAAGAAGGATACCGATCCGGAAGGCGATAATGGCCAAGGAGACGGAGGT
GCGTCTGGCAACGAAAAAGAGAAGGAGAAAAAGGAGAAGAAAAAGCGCAA
GATCCGCCTGGACATGCATCCTGAGCAGATCTTCGTGGACGGCTCCGAGG
CATACGTCTGGATCTACGATCCCATACCGCTCCACTACTGGATATTCGGC
TTCATCCTGCTACTTGGCGCCGTTGGCATTTGCCTATTCCCTCTGTGGCC
TCCACTGCTACGCAAGGGTGTCTACTACTTGTCCATTGCGGCTGCCGGCT
TCCTTGTTTTCATCCTGGCTCTGACATTGTACGTCTAATTGTGTTCATCA
TCGTGTGGGCATTAACCGGCGGCAAGTTGCACTTCTGGATCTTCCCCAAC
CTGACTGAGGATGTGAGCTTCTTCGCCTCCTTCCTGGCCACTATATGAGA
GCAACTATAACAGTGACCAATTATTCGTCCCGCTAGACCGACCAGAAATC
GGAATCGATGACAGAGATGATAAGAAAGCGATGCCGAGACCAGCCGTGAT
GCGATGGAGACGCTGACGGTGATGTTGATGCTGAGTTCCACGCTGAACAG
AAATCGGCCTCATCAAGAACTGAACCG
UFO11515.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trp1-RC | 1532 | CG4758-RC | 130..1178 | 9..1044 | 4755 | 97.6 | Plus |
| Trp1-RB | 2093 | CG4758-RB | 130..1178 | 9..1044 | 4755 | 97.6 | Plus |
| Trp1-RD | 1484 | CG4758-RD | 157..1130 | 84..1044 | 4380 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10010736..10011552 | 83..899 | 3990 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10010483..10010558 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:02:15 has no hits.
UFO11515.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:33 Download gff for
UFO11515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RB | 118..1181 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:42 Download gff for
UFO11515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RB | 124..1187 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:11 Download gff for
UFO11515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RB | 124..1187 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:11 Download gff for
UFO11515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10010477..10010557 | 1..83 | 95 | -> | Plus |
| 2L | 10010737..10011552 | 84..899 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:42 Download gff for
UFO11515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10010477..10010557 | 1..83 | 95 | -> | Plus |
| arm_2L | 10010737..10011552 | 84..899 | 99 | -> | Plus |
