UFO11517.5prime Sequence
1104 bp (923 high quality bases) assembled on 2012-05-31
> UFO11517.5prime
CAGTCGACATGGCTAAAATCTTAATCAGTGCTCTATTGTGCGTTGCCATG
TTTGGCTCAATGGCTCTTGGCTCGCCGGAATGCCCCACGCCCAATGGACG
ATTTGCATCGGGTGACCAGTGCGACTCTTACACAGAGTGTCAGGATGGTA
CTCCCGTGGAGAAGCTGTGTCCGGACGGCCTGCTCTTCCACCAGCGCACC
AAGGCGACCGGAGAGTGCACATACGCCCCGTACTCCACCTGCAAGGAGAG
GGCTCGCCTGCAGCCCGCCAACGGAACGGAGGAGTGTCCCCGCCAGTTCG
GCTTCTATCCGAACGGAGATGCGACCAAGTGCGGCGTCTATCGCAACTGC
GCCCACGGCGTGGCCAGCCTAACCAAGTGCCCCGAGGGCCTGGCGTTCAA
CGAGGAGACCTACCAGTGCGACTGGCCCGATCTAGTGGAAAGTTGCAACG
CCGAGGCGTACCTGGGCTTCAATTGCCCCGCCGCCGATTCCGCCGATGAT
AGCGCTGCCGCCGCCGTGGATGTCAGCCCGGAGGGTGAGCTGCGCTACTA
TCGCCATCCCCAGACCTGCAAGAAGTACTTCGTGTGCGTCAACGGACATC
CGCGCCTGTACAACTGCGGCAAGTATCTGGCCTTCAACTCGCAGACGAAA
CTGTGCGACTTCTACAACAAGGTGCCCGAGTGCTATGCCCTGCTCAAGGA
GAAAGCAGCGCCTGAAGCGGAGAAGCAACAGCCCCAGGTGGCTCAGCCGG
AGGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTG
GTCATAATCATATTATAATCATAATCATAATCCACAACTAGCCTAGGGAG
ATCCTGGTATGACTAGTGCTGGATTCTCACCAATAAAAAAACGCCCGGCG
GCAACCGAAGCGTTCTGAACAAATCCAGATGGAGTTCTGAAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGAATATCAATTACGCCCCC
GCCCTGCCACTCATCGCAATACTGTTGTAAATTCATTAAGCCTTTCTGCC
GACATGAAAGCCCTACCAACCGGACATGAAGAACCTTGCATCCGCCAGCG
ACAT
UFO11517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| obst-E-RB | 998 | CG11142-RB | 128..874 | 9..755 | 3690 | 99.7 | Plus |
| obst-E-RA | 994 | CG11142-RA | 128..184 | 9..65 | 285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5762677..5763369 | 755..63 | 3370 | 99.7 | Minus |
| 2L | 23513712 | 2L | 5765961..5766015 | 63..9 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:02:19 has no hits.
UFO11517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:34 Download gff for
UFO11517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-E-RB | 127..878 | 9..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:45 Download gff for
UFO11517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-E-RB | 128..879 | 9..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:13 Download gff for
UFO11517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-E-RB | 128..879 | 9..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:13 Download gff for
UFO11517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5762672..5763368 | 64..761 | 99 | <- | Minus |
| 2L | 5765961..5766015 | 9..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:45 Download gff for
UFO11517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5762672..5763368 | 64..761 | 99 | <- | Minus |
| arm_2L | 5765961..5766015 | 9..63 | 100 | | Minus |
