UFO11522.5prime Sequence
1084 bp (905 high quality bases) assembled on 2012-05-31
> UFO11522.5prime
CAGTCGACATGGAAACGATCAATCCCACGTTCTCGTACCTCACCAATCTG
GAGGTAATGCAGATTCTACAGAAGATCAAAAGCACCAAAAAGAAGTTCGG
CATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAGTATCTGGAGG
AGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAATTACGTTAAA
GACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGCAAATGATCAA
CGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATCGACGACAATA
AAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCAGCTGAGCTAC
AAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGGAAACACCGGC
GGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAATCTGGCGTAA
AGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAATAGCTCCAGCG
GACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATGTCGCTACTCC
TTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCAAGCCCAGTGG
AAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGAAGCCACTACA
GCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGTCCAATCCGAC
ACCAGATGGAGAAAACCTCGGGGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGGAAGTGGTCATTAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGCAACCGAGCCGTTCTGAACAATTCCAGATGG
AGTCTGAGGTCATTACTTGGATCTATCAACAGGAGTCAAGCGAGCTTCGA
ATATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTTATTTA
ATTTAGCCATTCTGCCGACATGGAGCCAATCCAATCGCCATGATTAACCT
GAATCCCCAGGCGGGCTCACGCACCTTGTCGCTT
UFO11522.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcp-RC | 1138 | CG4875-RC | 21..734 | 9..722 | 3570 | 100 | Plus |
| Rcp-RB | 1080 | CG4875-RB | 21..734 | 9..722 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16885075..16885513 | 284..722 | 2195 | 100 | Plus |
| X | 23542271 | X | 16884862..16885016 | 130..284 | 775 | 100 | Plus |
| X | 23542271 | X | 16884686..16884801 | 17..132 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:02:06 has no hits.
UFO11522.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:32 Download gff for
UFO11522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcp-RB | 14..736 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:39 Download gff for
UFO11522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcp-RB | 16..738 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:06 Download gff for
UFO11522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcp-RB | 16..738 | 1..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:06 Download gff for
UFO11522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16884864..16885016 | 132..284 | 100 | -> | Plus |
| X | 16884686..16884800 | 17..131 | 100 | -> | Plus |
| X | 16885076..16885517 | 285..728 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:39 Download gff for
UFO11522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16778719..16778833 | 17..131 | 100 | -> | Plus |
| arm_X | 16778897..16779049 | 132..284 | 100 | -> | Plus |
| arm_X | 16779109..16779550 | 285..728 | 99 | == | Plus |
