UFO11525.5prime Sequence
1112 bp (962 high quality bases) assembled on 2012-05-31
> UFO11525.5prime
CAGTCGACATGCGTGTCTCCTCGCTGTTCGTTGTGTGCGTGGCCTCCCTG
GTGGCCACCACTTTGGGTCGTCCTGAGCCCCCATCCCCGTACTCCTACCA
CGGATTGCCTCAGCAGCAGAGCCAGCGGGCTTTGCCACTCAATGCTCACC
CCGTTCCCCCGCAGATTTACCAGCCTCTGCCCCAGGAGCAGTCGTTTGCC
AACTTTGCACCGCCCCAGCAGACCTACTTGCCACCCCAAATGCATCTGGA
TGCCATCGAGCAAGTGGCTCCCACTGCCGCCGCCGCTGAGCCCCTGAATG
CCTACGATGACAGCTACAACATGGCCCACCGCCTGTCCGGAGTGCAGCAT
GCCAGTGGCTACAACAATGGCCCCCAGGAGACCAAGGTGCACAAGCACAT
CTACGTCCATGTGCCGCCAAAGGACTTCGAGGAGGAGGATGCCATCCAGA
CCCGAGTTCACCACCAGCAGGGACCCAAGCAGAAGCACTACAAGATCGTG
TTCATCAAGGCACCATCTGCTCCGGCTATCCGTCAGCCAGTTGTGCCACC
ACCACCCCAGAATGAGGAGAAGACTCTGATCTATGTGCTGCACAAGAAGC
CCGAGCAGGAGCAAGATATCGTGATCCCGACGCCACCACCCACCAAGCCA
TCGAAGCCAGAGGTTTACTTCATCAAGTAAAAGACCAAGAAGGACGAGGC
CCCCGTCTATGGACCCCCACCTGCAGAGATGGAGCCCCGTCAGGCCACCG
CCGAGGATTTCGCTCCATTGGCTGAGGTCGCCGATGTCCTGCCACCCACC
ACCCTGGCTCCTGCTCCCGAGCCAGAAGTAGAGCAGCCAGCCATTCCCTC
CGCGGTCTACGGACCACCCACTGCAGCTGCTAATACTGGTGAAGGAGGTT
CAGACACCTTTGTCCGCTCCTGCCAACCAGTATCTGCCCCCTGCCACCGC
TTCCCGCCGCCCTTGGCCATTGAGGACCTTCATTGGCGCCCAATCGTGTG
AAGAACAGCCGAGCCACGACTTGCTTCTTTCCCATGTGTGCCTGCCACAC
CAGCTACCGTTCCTCCCAACCGCTAACTCCTTAAGAACCTGAAAGCAAGC
TTTCTAGACATT
UFO11525.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlC-RA | 1396 | CG14254-RA | 103..1181 | 9..1093 | 4845 | 97.2 | Plus |
| TwdlT-RA | 1607 | CG5812-RA | 665..879 | 480..694 | 370 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26995284..26996130 | 144..992 | 3915 | 98.5 | Plus |
| 3R | 32079331 | 3R | 26994934..26995069 | 9..144 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 27050140..27050276 | 558..694 | 355 | 83.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:02:38 has no hits.
UFO11525.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:38 Download gff for
UFO11525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 92..1063 | 1..976 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:55 Download gff for
UFO11525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 96..1067 | 1..976 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:23 Download gff for
UFO11525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlC-RA | 96..1067 | 1..976 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:23 Download gff for
UFO11525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26994927..26995069 | 1..144 | 97 | -> | Plus |
| 3R | 26995285..26996113 | 145..976 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:55 Download gff for
UFO11525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22820649..22820791 | 1..144 | 97 | -> | Plus |
| arm_3R | 22821007..22821835 | 145..976 | 98 | == | Plus |
