UFO11529.5prime Sequence
1083 bp (951 high quality bases) assembled on 2012-05-31
> UFO11529.5prime
CAGTCGACATGCTTTTGGCCCGTTTAAACCATGTGCTGTCAGGACGACCG
ATGCGCCTTTTGGGCCAGTCTGGATGTCCTCGCCTGTGGAGCTCAGCCCA
TGCGCAGATGAACAGTAATTCCTTAAGAACACCTTCCTTGGCTCAAGGAA
AGTCAGTGATTCCTAAAAGGAATATGCAAGAACTTGGGATGAGAAAGTAT
TCCAGGGAGTCGAGAGATCGCGATCGTTCCCAACTGGAGAGTCGAACCAG
AGGTCCTTCCCTCAAGGAGCGCATGATGGGACCCCCCAGTGAAAATGCTT
ACTCCATGGGCAAGGGAGCGGCGGCTGGAGCGGCTCTGATGGGTCTCGTG
GGTCTGTGCTACTATGGTCTGGGCCTTGCCAATCAACCGAGTATCTACGA
CCACTCGATGGTGTGGCCCCAGTACGTGAGGGATCGTATTCATGCCACCT
ATGCCTATTTCGGAGCATCCTGTGGTGTAACAGCTGCTTCAGCCGTTGCC
TTTTTCCAATCGGATGCCATGATGGCTCTGATGACGCGTTCTGGATGGGT
TGCCTCATTGGTTACCCTGGGACTGGTAATGCTCAGTGGATCCATTGCAC
AAGGCCTAGAATATCAGCCGGGATTCGGAGCCAAGCAGCTGGCCTGGCTC
GTCCACTGTGCCGTTCTGGGAGCTGTCCTGGCACCCATGTGCCCTCCTGG
GTGGACCATTTTGACCAAGGCCCTTTTGTACACCAGCGGAATCGTGGGTG
CCCTGTCCACCGTGGCCGCTTGTGCCCCGAGCGAAAAGTTCCTGCATATG
GGCGGACCGCTGGCCAATTGGATTGGGCGTGGTTCTTCGCCCCCTCGCTA
GCCTTCATGTGGTTTGCCGCCCACTACTGCAGTGTGGGCGGAACTGGCCA
GCATGTCGTTGTACGGCGGGACTGATTTCTGTTCAGCGGAATTTCTTCTG
TACGATACCCAAAGGATCGTTAAGTCGGCGGGTTGTATCCCCAGTACAGT
AAATCCCTTACGATCCAATAATCTGCCCTGGCCATTTCTGAATGCCCCTC
ACATCTTATTCCATCGCAATTTATTTGCTGGAA
UFO11529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1287-RA | 1426 | CG1287-RA | 129..1210 | 4..1082 | 4840 | 97.4 | Plus |
| CG2076-RB | 1491 | CG2076-RB | 907..1163 | 615..874 | 385 | 77.8 | Plus |
| CG2076-RA | 1319 | CG2076-RA | 735..991 | 615..874 | 385 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7501237..7502248 | 1019..4 | 4520 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:02:46 has no hits.
UFO11529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:39 Download gff for
UFO11529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1287-RA | 125..1175 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:58 Download gff for
UFO11529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1287-RA | 125..1175 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:26 Download gff for
UFO11529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1287-RA | 125..1175 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:26 Download gff for
UFO11529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7501202..7502248 | 1..1051 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:58 Download gff for
UFO11529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3326924..3327970 | 1..1051 | 97 | | Minus |
