UFO11530.5prime Sequence
996 bp (832 high quality bases) assembled on 2012-05-31
> UFO11530.5prime
CAGTCGACATGACCGTGACCGCCACACCGATGCCGGACAATCTGCGGGTG
AAAGCCTTATCCGAGTACCGAAAGAAGTTGCTAGAGCACAAGGAAATCGA
GGGACGCCTCAAAGAAAAGCGCGAGGAGATCAAGGATCTGACCAAGCTGT
ACGACAAGTCGGAGAACGATCTAAAGGCCCTGCAGAGCGTGGGACAGATC
GTTGGTGAGGTGCTGAAGCAGCTGACCGAGGATAAATTCATTGTGAAGGC
CACCAATGGACCCCGCTACGTGGTCGGCTGCCGCCGGCAGCTGGACAAAG
CCAAGCTGAAGTCCGGAACTCGTGTGGCCCTCGACATGACCACACTGACC
ATTATGCGCTACTTGCCGCGCGAGGTGGACCCACTGGTGTACAATATGTC
GCACGAGGATCCCGGGGATGTCACCTACTCGGCCATCGGCGGCCTAACCC
GACCAAATTCGCGAGCTGCGCGAAGTGATCGAGCTGCCCCTACTGAATCC
GGAGCTCTTCCTGCGCGTCGGCATCACGCCACCGAAGGGTTTTTGCTGTA
CGGACCTCCTGGCACCGGCAAGACCCTGCTGGCCCGTGCAGTGGCCTCCC
AGCTGGACGCCAACTTCCTCAGGGTCGTGTCCTCGGCGATTGTCGACAAG
TATATTGGCGAGAGTGCGCGTCTCATTCGCGAGATGTTCAACTATGCCCG
CGACCATCAGTCCCTGCATCATTTTCATGGACGAAATCGACGCTTTCGGT
GGTCGGCGCTTCTACGAGGGCACCTCTGCCGATCGCGAGATCCAGCGCAC
CCTGATGGAGCTGCTCACCAGATGGACGGCTTCGATTCGCTTGCCCAAGT
CAGATGATCATGGCAACCAATCGTCGACACCCTCGATCTGCCCTCTGCGT
CGGTCGCTTGAAGGAGATCGAGATTCGCTGCACGAGCCAGCTAGTGAATT
CTCAGATTCCGCCTGAAAATCGCAGGCCGCGATTCGACTTCAGCCA
UFO11530.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt4-RB | 1465 | CG3455-RB | 123..1108 | 9..973 | 4270 | 96.8 | Plus |
| Rpt4R-RB | 1502 | CG7257-RB | 336..1063 | 149..875 | 1275 | 78.8 | Plus |
| Rpt4R-RA | 1391 | CG7257-RA | 225..952 | 149..875 | 1275 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6290122..6290775 | 888..238 | 2905 | 98.3 | Minus |
| 3L | 28110227 | 3L | 11942247..11942715 | 149..617 | 690 | 77.4 | Plus |
| X | 23542271 | X | 6290839..6290958 | 237..118 | 600 | 100 | Minus |
| X | 23542271 | X | 6291015..6291123 | 117..9 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 11942793..11943046 | 623..875 | 480 | 82 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:02:51 has no hits.
UFO11530.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:40 Download gff for
UFO11530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt4-RA | 121..1063 | 9..941 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:00 Download gff for
UFO11530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt4-RB | 123..1065 | 9..941 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:28 Download gff for
UFO11530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt4-RB | 123..1065 | 9..941 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:28 Download gff for
UFO11530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6290062..6290775 | 238..941 | 96 | <- | Minus |
| X | 6290839..6290958 | 118..237 | 100 | <- | Minus |
| X | 6291015..6291123 | 9..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:00 Download gff for
UFO11530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6184095..6184808 | 238..941 | 96 | <- | Minus |
| arm_X | 6184872..6184991 | 118..237 | 100 | <- | Minus |
| arm_X | 6185048..6185156 | 9..117 | 100 | | Minus |
