UFO11531.5prime Sequence
1119 bp (964 high quality bases) assembled on 2012-05-31
> UFO11531.5prime
CAGTCGACATGCGCACAGTGCTGTTGAGCAAACACGACGAGCTGTACCTG
GAGAAATGCGCACAGGAGAACCAGTTCTCGTACGGGATAATCGTGGGCCA
TCAAGCGGATCTCACCAAGAGCGTGGTGGTCCACCTGGCCAGGAACAACG
AGGAGGATGCGGATCTGGAGGACCTGTCGGAGGTCCGGCTCACCATCTCG
GACATCAACTCACAGGCATTGGCCTCCCAGTGGCTGAGCGCCAGCAAAAT
GTGTCCCGGATCTTTTGACGTCATCGGAATCTTTGTGTCTTCAGTAAGAT
CCGATGTAGTAAACGAACAGAGCGCCGAATTTAAGAATGCCAAAAAGCTG
TTTTCAGATATTTACGATTTGCTCCTGAAAAGCAACAGCTCGTTTGGCGT
CTACACCACCGACATTGCACAGACTGATTTCGTATTCCTCTCGTATTCGC
TGGCCGACAAGAAAGTGCTCTGCAAGAACTACAGCTATGGCAACGGCGGC
ACTTTCACCAATATGGAGTTCCGGTTTGTGGACAAACCCTTCGAGTGGAT
TCAGCTGGAGTGCAGCTACGATTTCGATGATGTGCTGCCCATACTGGACT
CCTCGCGTCGCGTCAACATCGAAGACCAGTTCCAGAGTATGATAGTGTCG
GTGCGCAAGAACCTGCTCGCCAGTGAAGTATTCCTCCAAAACGAAGTTGT
CGAGGACACCATCGATCTGCAGGCCTATATCAAAAAGAAAAAGACGAAAG
TGGACAAGCTGCAACCGACATCGACAACAGGTGGCACGGCCACTGCCTCG
AGCAACACCACTGACTCCCTGCCGCGGGCTTGCGTCCGAAGGAATCATCG
GAGGCACTGAAACCATCCGGGCGAGCATCGTGCTCCCATGAAATGCCAGC
TGAGCAAACCGACGGACATCAAGGTGCGCGAATTTAATGGCACGCTGCAA
CATGAGCGGCAATTATTACCTCAAAGGTATTTCTGCAATCCTCGAACAAT
TATAGCAGAATGTTAAGCCGTTTCCTACGCGAACGATGGTCCTCCGGTTC
GCTGAATACGCGGTATACAAGGTGTTACTGGCATGGACTCACCGATCCAA
TATGTGACATGGAAGCTCT
UFO11531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10616-RC | 1838 | CG10616-RC | 110..1209 | 9..1119 | 5025 | 97.7 | Plus |
| CG10616-RA | 1689 | CG10616-RA | 110..1209 | 9..1119 | 5025 | 97.7 | Plus |
| CG10616-RB | 1737 | CG10616-RB | 643..1257 | 494..1119 | 2600 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12473185..12473718 | 494..1032 | 2290 | 98 | Plus |
| 3L | 28110227 | 3L | 12472022..12472197 | 102..277 | 880 | 100 | Plus |
| 3L | 28110227 | 3L | 12472707..12472832 | 368..493 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 12471837..12471929 | 9..101 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 12472546..12472637 | 276..367 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:02:54 has no hits.
UFO11531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:40 Download gff for
UFO11531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10616-RA | 104..1213 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:03 Download gff for
UFO11531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10616-RA | 100..1209 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:31 Download gff for
UFO11531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10616-RA | 100..1209 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:31 Download gff for
UFO11531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12471827..12471929 | 1..101 | 96 | -> | Plus |
| 3L | 12472022..12472196 | 102..276 | 100 | -> | Plus |
| 3L | 12472547..12472637 | 277..367 | 100 | -> | Plus |
| 3L | 12472707..12472832 | 368..493 | 100 | -> | Plus |
| 3L | 12473185..12473799 | 494..1119 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:03 Download gff for
UFO11531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12464927..12465029 | 1..101 | 96 | -> | Plus |
| arm_3L | 12465122..12465296 | 102..276 | 100 | -> | Plus |
| arm_3L | 12465647..12465737 | 277..367 | 100 | -> | Plus |
| arm_3L | 12465807..12465932 | 368..493 | 100 | -> | Plus |
| arm_3L | 12466285..12466899 | 494..1119 | 95 | | Plus |
