UFO11532.5prime Sequence
1078 bp (834 high quality bases) assembled on 2012-05-31
> UFO11532.5prime
CAGTCGACATGAATGTCCTGCTCCGTTGTACGTTCCTGCTGCTCACCCTG
GCCATATGTGGCAGCTGGGCCATTCGATGCTACCAGTGCTCCTCCGACCA
GGATCGCAAGGGACACGACAGCTGTGGCGCCTACAAGAGATTCAACCGCA
CCGAGCACATTTCCATTGAGTGCAACAGCGACGAGAGCCACATGCCAGGA
TCCTTCTGCATGAAGGTGGTGCAGCAGGGACCGAGAGGATTCATCTGGGA
CGGTCGTTGGCGCCAGGTGATCCGACGATGTGCATCCGTTTCCGATACCG
GAGTGGTTGGCGTCTGTAACTGGGGAGTCTACGAAAACGGAGTGTACTGG
GAGGAGTGCTACTGCTCCAGCGACAGCTGCAATGGTTCCAGCTTAGTTCA
AATGCACGGATCCCTGCAGCTTCTGTTGGGACTCCTGTTGATTGGCGTTG
CCTCCAGAATATTTAGAAGTGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCTT
TAAGCATTTCTGCCGACATGGAAGCCATCACAAAACGGCATGTATGAAAC
TCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATTATTATTT
GCCCATGGTGAAACCGGGGCGAGAAGTTGTCCATATTGGCCCACGTTAAA
TCAAAACTGGTGAACTCCCCCCAGGGATTGGCTGAAACGAAAACTATTCC
TCAATAAACCCTTTTAGGGAATATGGCCAGCTTTTCCCCGTAAACGCCCC
TTCTTGCCGATATATGGTGTGAATCTGCCGGGAATTCGTCTGCATTTCCA
CTCGAGCGTATAAAACTTTTTCCATTTT
UFO11532.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6583-RA | 1071 | CG6583-RA | 113..574 | 9..470 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12171701..12171924 | 470..247 | 1120 | 100 | Minus |
| 2L | 23513712 | 2L | 12172116..12172303 | 247..60 | 940 | 100 | Minus |
| 2L | 23513712 | 2L | 12172422..12172474 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:02:58 has no hits.
UFO11532.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:41 Download gff for
UFO11532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6583-RA | 88..560 | 2..474 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:05 Download gff for
UFO11532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6583-RA | 105..577 | 2..474 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:32 Download gff for
UFO11532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6583-RA | 105..577 | 2..474 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:32 Download gff for
UFO11532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12171701..12171924 | 247..470 | 100 | <- | Minus |
| 2L | 12172117..12172302 | 61..246 | 100 | <- | Minus |
| 2L | 12172423..12172482 | 2..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:05 Download gff for
UFO11532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12171701..12171924 | 247..470 | 100 | <- | Minus |
| arm_2L | 12172117..12172302 | 61..246 | 100 | <- | Minus |
| arm_2L | 12172423..12172482 | 2..60 | 93 | | Minus |
