UFO11538.5prime Sequence
1094 bp (993 high quality bases) assembled on 2012-05-31
> UFO11538.5prime
CAGTCGACATGAACAAATGTTTTAGGTGCCAGCCCCGGATATCGCTTTTC
CAGTTCAGCCTACCGCGGTGCTATGCCGCAGTGCAGCCGGGATGTCCACC
GCCACAAGAAAAACCCGTCGTCGGTTTGCCACACAAGCCCGATCCCAAGA
CGGTGAAGTGCGACTATATAGGACCGCCAGACGCGCAATCAAACCTACGT
CCGTACGTACGGCACTACGGCGATGAGGAGACGCGGCTGGCAAGAAGCCT
GCGTCTTAAGCGGATCGAGGTGGAGGCATGGAACACGGACTTCTGGACAA
AACACAATAAGCGCTTCTACGAGGAAAAGGAAGACTTCATCCGCCTGCAC
AAGGAAAGCGGAACCAGCGAAGTGTCCGCGGACCAGATGAGCCACTTCTA
CAAAGCGTTCCTCGACAAGAACTGGCGCATCCACATCATGTACAACATCT
CCTGGTACCTGAAGAACTTCGACATACTCACCCTGGCTGCCGCAGTCCAG
CTCCAGAGGCTTCTGGCGCTGGCCAAGCGAAGATCTGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATATATTTGCCCATGTTGAAACGGGGCGAGAGTGTCCATATTGGCACGTT
TAAATCAAACTGGTGAACTCACCCAGGGATTGCTGAAACGAAACATATCT
CATAACCCTTAGAAGCCAGGTTCACCGTACCCGCCCATCTGCAATTATGT
GTAGACTGCGGATCGTCTGGATTCATTCAACGATGAACGTTTCA
UFO11538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14806-RB | 770 | CG14806-RB | 43..570 | 9..536 | 2640 | 100 | Plus |
| CG14806-RA | 1019 | CG14806-RA | 292..819 | 9..536 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1880683..1880947 | 60..324 | 1325 | 100 | Plus |
| X | 23542271 | X | 1881018..1881232 | 322..536 | 1075 | 100 | Plus |
| X | 23542271 | X | 1880573..1880623 | 9..59 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:03:11 has no hits.
UFO11538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:43 Download gff for
UFO11538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14806-RA | 277..804 | 9..536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:11 Download gff for
UFO11538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14806-RA | 292..819 | 9..536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:35 Download gff for
UFO11538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14806-RA | 292..819 | 9..536 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:35 Download gff for
UFO11538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1880573..1880623 | 9..59 | 100 | -> | Plus |
| X | 1880683..1880946 | 60..323 | 100 | -> | Plus |
| X | 1881020..1881232 | 324..536 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:11 Download gff for
UFO11538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1774606..1774656 | 9..59 | 100 | -> | Plus |
| arm_X | 1774716..1774979 | 60..323 | 100 | -> | Plus |
| arm_X | 1775053..1775265 | 324..536 | 100 | == | Plus |
