UFO11544.5prime Sequence
1125 bp (990 high quality bases) assembled on 2012-05-31
> UFO11544.5prime
CAGTCGACATGACGACCCACCAGTTGCTAAACAAGAATGTTCGCACCATG
CCCTCCTGGGTGATGGAGGCAAATGACCGCATTGGGCCCAAACCGCCACC
CACGCCACCAAACGGTGTGGCTGGTGGTCTTCCCAAGGCGCCTGCTCTGC
CGCCCAAGGCGAAGAGCACTCCCGAGCCGGACTACGAGATCATCGAATTC
TCCAGCCAGCAGTACTCCAACGAACCGATGAAGACCACAGTGATCAGAAC
CAAGACACCAGATAACAAACTAAAGTGCACCTTGTGCGGTTCCCAGAATC
CCTGGGTAACCTGTGCCGAGTGCGCCGGCCAAATCTTTTGCGCCTCCTGC
GACGACATGTTCCACAAGCATCCCAAACGTAAGCAGCACATGAGAAAGGC
TGTGGAGCAGGGCACACCGCCGATTCCGCCAAAGGCACAGGCCGGTGGTG
GGGCACCACCACCAGTGGCACCTCCACGACGCAGCAAACGAGGCCTTTTG
ACACCGTTTCTGGGCCGCAAGGATCAGGTACGCCACTGCACGATCTCCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAACGGCATGATGGACCTGATCGCCAGCGGCATCAGCACCTTGTC
GCCTGCGTATATATTTGCCATGGTGAACGGGGGGCGAAGAGTTGTCCATA
TTGGCCACGTTTAATCAAACTGGTGAACTCACCAGGGGATGCCTGAGACG
AAAACTATTCTCCATACCCTTAGGGAATAGGCAAGTTTCACGTACACGCC
AATCTGCATAATGTGTGAACTGCGATCGTCTGGAATTTCACTCAGCGAGA
ACGGTTCAGTTGCCTATGAACCGGG
UFO11544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11321-RK | 763 | CG11321-RK | 129..668 | 9..548 | 2700 | 100 | Plus |
| CG11321-RD | 783 | CG11321-RD | 149..688 | 9..548 | 2700 | 100 | Plus |
| CG11321-RJ | 8906 | CG11321-RJ | 149..667 | 9..527 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6770335..6770534 | 261..62 | 1000 | 100 | Minus |
| 2L | 23513712 | 2L | 6769932..6770083 | 548..397 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 6770133..6770273 | 399..259 | 705 | 100 | Minus |
| 2L | 23513712 | 2L | 6770591..6770644 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:03:15 has no hits.
UFO11544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:44 Download gff for
UFO11544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11321-RD | 130..669 | 9..548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:13 Download gff for
UFO11544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11321-RD | 130..669 | 9..548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:38 Download gff for
UFO11544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11321-RD | 149..688 | 9..548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:38 Download gff for
UFO11544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6769932..6770081 | 399..548 | 100 | <- | Minus |
| 2L | 6770134..6770270 | 262..398 | 100 | <- | Minus |
| 2L | 6770335..6770533 | 63..261 | 100 | <- | Minus |
| 2L | 6770591..6770644 | 9..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:13 Download gff for
UFO11544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6770335..6770533 | 63..261 | 100 | <- | Minus |
| arm_2L | 6770591..6770644 | 9..62 | 100 | | Minus |
| arm_2L | 6769932..6770081 | 399..548 | 100 | <- | Minus |
| arm_2L | 6770134..6770270 | 262..398 | 100 | <- | Minus |
