UFO11545.5prime Sequence
1125 bp (1004 high quality bases) assembled on 2012-05-31
> UFO11545.5prime
CAGTCGACATGTCCGACGACGACTGCGATATATTCAGTGCTGCTCGCAAG
CGGATTCCCGAAATAGCTTTGCCCAAGAATCCTTACAATCTTGGCAATGA
TTCCTTCTCCAAGGAGGTGGACTACGATTTCATTGAAGACCTCCCCAAGA
AATCAACTAAAACTGGCAAACGAAAGAACCCTGCAGCGACGCGGAAAAAT
CCACCCAAAAGTCAGGATGATGCTTCGCCACCAAAACAGGCAGAACATAA
GGCTGTGGAGCCAGAAGAGGATATGAGAACAGAGCGCTCCCTATCACCGG
TATCCCTGTTGATATTGGAGATGGAAAAGAAAAATGGCCAGCAATCGGAT
GTGGAGAAGCACGCCAAAGAAAATGACGTTGGTCCTGTGGCCAGACGCAC
ACGGTCATCGTTAAATAGGTCAGAAATGGCGCCACCACCTGTTTCACCGA
CTGTGGAGGTGCCCACACAGACGAAACCAAAGAAGCGCGGCCAAAAAAAG
AGAACATCTCTAACAACCACAACCAGCAACTCTGCTTCGATGGAGGTCTC
ATTGCCAAGCATTCAGAACAATGAGCACATTAGCAGACGGTGGACGTTGG
CCGAAGTTGCAGCCCGTTCCAAAGTGGTGGACAGTATTGATCTGGTATCT
GCGGTCGCTCCCCGAGTGGAGGGATTTGTTAATCTAGACTCTGAAGACGA
GGGTGAAAAGGAGGCTCCTCCTGTCGTAGAGGAAGAAAATATTTTTGATA
ACGATAATCCCACAATAGAAGTAGCTTTGTCGTGGCTTGACGAGATCCAG
ATTTATAAATTGCGGCAGCACCAAAAGTTTAAGCATCTGTTCAAGGAGTT
AGCATCACGCAATGGGATAGATGAGATGATATACGGTGGATATGTACTAT
AACTTCGTTGGACCTGAGATACGCGCACAGCATTGGTCTCAAATCATTTC
ATACGCTCACTGGCCATCAACAAAGAAGTCCACAATATAACACGTGGCTG
CTAAATTGACTAACAATCCAGAAGGCTCTTGCGAAACTAGAGTTCAGTAA
AGGTACAGCCGATAATGAAGCATCTTTGGTGATCATGGAGAAACTGATAT
TTCAATCCTATTATAATGTGCGCTG
UFO11545.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4449-RC | 1494 | CG4449-RC | 77..1194 | 9..1105 | 4840 | 97 | Plus |
| CG4449-RB | 1671 | CG4449-RB | 254..1371 | 9..1105 | 4840 | 97 | Plus |
| CG4449-RF | 1491 | CG4449-RF | 77..1191 | 9..1105 | 4785 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23250606..23251104 | 563..65 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 23250023..23250202 | 959..784 | 685 | 97.2 | Minus |
| 3R | 32079331 | 3R | 23250425..23250540 | 679..564 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 23250256..23250363 | 785..678 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 23251167..23251224 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 1417..1463 | 730..777 | 111 | 72.9 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 1309..1355 | 730..777 | 111 | 72.9 | Plus |
UFO11545.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:44 Download gff for
UFO11545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RB | 250..1289 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:15 Download gff for
UFO11545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RB | 250..1289 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:39 Download gff for
UFO11545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RB | 250..1289 | 1..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:39 Download gff for
UFO11545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23250023..23250201 | 785..959 | 97 | <- | Minus |
| 3R | 23250257..23250363 | 678..784 | 100 | <- | Minus |
| 3R | 23250427..23250540 | 564..677 | 100 | <- | Minus |
| 3R | 23250606..23251102 | 67..563 | 100 | <- | Minus |
| 3R | 23251167..23251228 | 1..66 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:15 Download gff for
UFO11545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19075745..19075923 | 785..959 | 97 | <- | Minus |
| arm_3R | 19075979..19076085 | 678..784 | 100 | <- | Minus |
| arm_3R | 19076149..19076262 | 564..677 | 100 | <- | Minus |
| arm_3R | 19076328..19076824 | 67..563 | 100 | <- | Minus |
| arm_3R | 19076889..19076950 | 1..66 | 93 | | Minus |
