UFO11546.5prime Sequence
1096 bp (915 high quality bases) assembled on 2012-05-31
> UFO11546.5prime
CAGTCGACATGATGGAGTTCGGGAAATCGTCGGATCACTCCCAGCACAGC
GCTTCCGAGGCGTCGGCGGACTCCGGCAGCCTGGCAAACAGCGATCTGGC
CGTCACGCCCACCAAGCGGGAGCGCCGCAAGTCGCCGGCCACCAGTTCGG
ACAACAACAGCACCAGCGTCCAACCGCCAATGTCGCCGTCGTCCTCGGTG
GCGGACACCACCTTTGAGCCCACCATCGACATGATGGTCAACGACTTTGA
CGACGAGGCCACGCTGAACGAGGAGGAGGCTCTGGCGGACATGGAGGCGC
ACAGTGCCGAGGACGAGATCGCCACGCTGCGCGAGGAGAGCGAGATGCCC
ATCGAGGAGCTGCTGGCCAAATATGGCGGGACAGCGGCTTCGCCGGCAAT
GAGCAGCTCGAACCGTTCCGGCAGCAGTTCACGACGTGCACGTAGGGCCA
CAAAGCGCCAGTACCAGGAACTGGACACGGAGATGGCTCACACGTCGACC
TCCACTTCGAGCAGCACATCGCAAACTGGAGAAACACGACGGCATAGACC
AGGAGGAGGAACCCAAGGAGGAGGCCGATAAGCTAGCATCACCCCCAGAA
TCAGGAGAAGCTTCGTCCGTGGACACGGAGGATGCGCAAAAGTATGAGGG
GATCAAGAAGCAGCATCGCTCACATTTGCTGGACCTGTATCCAGATGAAT
CCTTCGTCGATCTGGCGCCCACATGCGGAGAGGAGACGGAAAGATTCACT
CCACTGCAAACACTGTTCGATGAAGTGGAGGCCGAGGAGGAGGAGGAAAG
CGAATCCGAGTTGGACGATGCTCGGAAGATAATAATGGTGGGTCACGACT
ATCAAGCTGAGATCCCAGAAGGGGCTGTCGCATATGGCGATTATATTTGC
CATATGAGAACGAGATCATTTGATCTGGGAGCCCAGCTAGTCAGCGAGCG
CGAGGTGGAAGGAATTTTCTTGCCAAGATACAGGAAACCCGATCGATAGT
TCCGCCGGATGACGGTCAAAAACTACCGGCGGGACGAGAAAGTCCAGCTC
AGGTCTACTATCGAACCTGCGCTCTCCATACAGCCTCCAGCCACGC
UFO11546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1620-RC | 2204 | CG1620-RC | 87..1173 | 9..1096 | 4845 | 97.3 | Plus |
| CG1620-RB | 2272 | CG1620-RB | 87..1173 | 9..1096 | 4845 | 97.3 | Plus |
| CG1620-RA | 2529 | CG1620-RA | 206..1292 | 9..1096 | 4845 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7495526..7496261 | 745..9 | 3635 | 99.9 | Minus |
| 2R | 25286936 | 2R | 7495194..7495461 | 1015..746 | 895 | 94.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:03:02 has no hits.
UFO11546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:42 Download gff for
UFO11546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RB | 206..1292 | 9..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:07 Download gff for
UFO11546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1292 | 9..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:33 Download gff for
UFO11546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1620-RA | 206..1292 | 9..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:33 Download gff for
UFO11546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7495111..7495461 | 746..1096 | 91 | <- | Minus |
| 2R | 7495526..7496261 | 9..745 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:07 Download gff for
UFO11546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3382616..3382966 | 746..1096 | 91 | <- | Minus |
| arm_2R | 3383031..3383766 | 9..745 | 99 | | Minus |
