UFO11547.5prime Sequence
1142 bp (1010 high quality bases) assembled on 2012-05-31
> UFO11547.5prime
CAGTCGACATGGAAAATTCTGCGCGAATCGTATATGTGTGCAGTCTCTGC
CTTCGTCAATATGATCTCCAGGAGGATCTTCGAGGACATCTCGTCTACTT
TCACGGCTATGAGCCCATCTCAACGCCCAGTGTCAAAAACAAAACTGCGA
AGACTTCAACTAAGGAACAAACTGCAGCCGGCAGCAACAGCCAGGATAAG
CAAACCGTTGTGGAGCGATCGGAGAACTCGGAACCCCCGGCAAGTGAACT
GCAGCCCATGCCTTTCAAGGACTTTCGGCTGGTGCTAAGGGCCAACATGT
TAGAGCCGTGCTCCTTTGGAAAGGAATGCCCCTTCAAGTTCCAAGATGCT
ACCAAAATGGAGCTCCACTGTAGTTGCCATAAGGGTGGCAGTTTTTCCTG
CTGCGAATGTGGCATGGAACTGCCCAACTGGCGGCGGTGCTCGGCTCACC
TGTGGAAAGCCCACCAGGTGGATGTGGACCTACTAGTGTGTCCCGTTTTC
GAATGCAACTACAAGTCGCCCATATCCGCTCTCGTGTGGCGCCACATGCA
GGTTCACAAAAAGTGGCGACCCAGGGTGCTCCGGTCACTGGCTGCCGTTC
AGCGGAGAAGAAAGCTCAAGGAACAGTCCGCAGAGATGGCCGCGCAACCT
GCTGCTCTGCCACCATCGTCAAAGAAAAACAAATACTATGCCGAGAAGAC
TTGCGAGATTTGCAATCGCAAGTTTGTCAACGGTAAAACGCTCTCTAAAC
ACGTGAAGACTGTTCACAACAAAATCAAGCCATTTATCTGCAATGTGTGT
GGCAAAAAGACGGCTCGCAAGGCTAGCTTAATAGTGAGTTCAGATAGCAC
TTTACGATCTTCTTGCTACCTAATACTCTTTCAGATTCAAATGCGTCAGC
ACACGGGCGAGAAGCCGCTGCAATGTGGCGAATGCAGTTCCCCACTCGCG
ATCCCAGTGGTCCTGCACAAGCATCGGCAGCGTCAGCAAGCCTTTCTAGA
ACATTCGTTGGCGCGCCGACCCAGGTAGTGGTCATATTCATAATCAATAA
TCAATATCATATCACACACTAGCCTAGGAGATCCTGTCATGAACTAGTGC
CTGGATCCTCACAAATTAAAAACGCCCCTGGCGCCTACCCGT
UFO11547.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11456-RB | 1806 | CG11456-RB | 65..1042 | 9..985 | 4790 | 99.5 | Plus |
| CG11456-RC | 1433 | CG11456-RC | 65..889 | 9..833 | 4125 | 100 | Plus |
| CG11456-RA | 1754 | CG11456-RA | 65..889 | 9..833 | 4125 | 100 | Plus |
| CG11456-RC | 1433 | CG11456-RC | 890..990 | 885..985 | 430 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20842403..20843081 | 308..985 | 3220 | 99.3 | Plus |
| 3L | 28110227 | 3L | 20842051..20842351 | 9..309 | 1505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:03:06 has no hits.
UFO11547.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:42 Download gff for
UFO11547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11456-RB | 51..1036 | 9..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:09 Download gff for
UFO11547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11456-RB | 65..1050 | 9..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:34 Download gff for
UFO11547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11456-RB | 65..1050 | 9..992 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:34 Download gff for
UFO11547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20842051..20842349 | 9..307 | 100 | -> | Plus |
| 3L | 20842403..20843081 | 308..985 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:09 Download gff for
UFO11547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20835151..20835449 | 9..307 | 100 | -> | Plus |
| arm_3L | 20835503..20836181 | 308..985 | 99 | == | Plus |
