UFO11549.5prime Sequence
1115 bp (988 high quality bases) assembled on 2012-05-31
> UFO11549.5prime
CAGTCGACATGGTTTCGTTACAGAGTGGAAATCTAAAACTTAATAAAGTT
GATATTTCTCTGCAAGACTGTCTTGCGTGTTCTGGTTGCATCACTTCAGC
TGAAGAAGTCCTTATCACGCAGCAGAGCCGAGAAGAGTTGCTTAAGGTCC
TTCAAGAGAATTCAAAGAATAAGGCCTCTGAAGACTGGGATAACGTGCGT
ACGATCGTGTTCACCCTTGCCACCCAGCCTATACTAAGCTTAGCCTATCG
CTATCAGATAGGTGTGGAGGATGCTGCCCGTCATCTTAATGGGTATTTTC
GCAGTTTGGGTGCCGACTATGTTTTGTCCACTAAGGTGGCGGACGATATT
GCGCTGCTCGAATGTCGTCAAGAATTTGTAGATAGGTACCGCGAAAATGA
GAACTTGACCATGCTTAGCTCCTCTTGTCCGGGGTGGGTTTGTTACGCGG
AGAAAACACACGGAAACTTCTTATTGCCTTACGTTTCCACGACCCGATCT
CCTCAGCAAATAATGGGAGTGCTTGTGAAGCAAATCCTTGCCGATAAGAT
GAATGTTCCTGCGTCACGAATCTACCATGTGACCGTGATGCCTTGCTACG
ACAAGAAGCTTGAGGCCTCTCGAGAGGACTTTTTCAGCAAGGCAAATAAC
TCACGCGACGTAGACTGTGTAATCACTTCAGTTGAGGTGGAACAGTTGCT
TAGTGAGGCTCAGCAGCCGCTGTCGCAGTACGATCTCCTTGATTTAGACT
GGCCATGGTCTAATGTACGCCCAGAATTCATGGTATGGGCTCACGAGAAG
ACGCTATCTGGCGGTTACGCAGAACACATATTTAAGTACGCCGCAAAACA
TATTTTCAACGAAGATTTAAAACAGAGTTGGAAATTCAAACAGCTCAAAA
CCGCGACTTTAGAGAATTATACTTAAACAGAATGGCAAACTTGTCCTGAA
TTTGCAATTGCTACCGGTTTCCCGGAACATACAAACTTGGTACAAACCTG
AGCGTGAAAAGTTATCAATTTACCACTTTGTTGAAGGTATGCCCTGTCCC
TCGGGCTGATTAACCGGAGAACCCAATACGTCCCACTTACGGACGAACGG
TCGCACTTACCGGAA
UFO11549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-RD | 2403 | CG17683-RD | 283..1375 | 9..1094 | 4945 | 97.5 | Plus |
| CG17683-RC | 1785 | CG17683-RC | 231..1310 | 22..1094 | 4880 | 97.5 | Plus |
| CG17683-RA | 1696 | CG17683-RA | 243..1322 | 22..1094 | 4880 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4131307..4131979 | 9..681 | 3365 | 100 | Plus |
| 2R | 25286936 | 2R | 4132034..4132429 | 679..1069 | 1350 | 94 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:03:24 has no hits.
UFO11549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-31 11:49:45 Download gff for
UFO11549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RD | 268..1378 | 1..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:18 Download gff for
UFO11549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RD | 276..1386 | 1..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:40 Download gff for
UFO11549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RD | 276..1386 | 1..1104 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:40 Download gff for
UFO11549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4131300..4131979 | 1..681 | 99 | -> | Plus |
| 2R | 4132037..4132467 | 682..1104 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:18 Download gff for
UFO11549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19542..19972 | 682..1104 | 93 | | Plus |
| arm_2R | 18805..19484 | 1..681 | 99 | -> | Plus |
